Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0945 ATGATAGGAATTGATCTCACACTAAAAGTGGATGAGAAAGAAGTAGAATCAGAATCAGAATCAGTTGCAGCAGCTGCAGGTAAAGATCATGATCATGATCATACAGAAGATGCAGCCGAAATTACTGCTGTGGGAGAAGTACTAGAGGATAATTCCTCTTTAATGGCGGAAACATCCCACCCTCACCATAATAACAACACAGAGTTCGAGCTGTCTGTGTTGCAGAAGGAAATGGATCGAATGAAAGAAGAAAACAACTTGTTGAGGAACGTAGTGGAGCAAACAATGAAAGATTTCTACGATCTTCAGACGAAATTTACAATCACCCAACAACATAATCAAATAAAGAATCTTTCACTCCATGGTTATAACCATCATGAGGAGGAGCAAAAGGAGATTCCTAAAGTTGATCTTCATCATGAAGATCGAGGTATTATAAGGGAGAATGAATTAGGGTTATCATTAGGGTTACATACAAGTAGCTCATCATATGATCATCATCAAATTAGAGATCAAGATCACAAAGAAAAGAATAAGGAAGCACATGATATGATCACAAGTACTACTACTGCTACTACTACTGGTAATAGTAACTTGGGGCAAAACAAGCTGCACTACCAACCTTCGGATTTTCCCGGAATAGCGAACCATGTTTCCGCCCCGCCAAACAGAAAAGATAGGGTTTCTGTTAGAGCCAGATGTGAAACAGCCACAATGAATGATGGGTGTCAATGGAGAAAATATGGGCAAAAAATTGCAAAAGGAAATCCTTGCCCACGAGCCTATTATCGTTGCACGGTTGCTCCCGGCTGCCCAGTCCGAAAACAGGTGCAGAGATGTTTGGAAGACATGTCCATTCTAATAACAACATATGAAGGAACACATAACCATCCACTCCCTGTTGGAGCAGCAGCCATGGCTTCCACTACCTCAGCAGCGGCAGTGGCTGCGGCTGCTAATTCCCTTTCAAATACTAGTTACCATAACTTTCCCTTGATAAACCCATCTACTTTTCTTCATCCCTCAATTACAAATCATCTTAAAATCACAAACCCTAATGACCCATTACTAGAATTCTCCCTCAATAATAATGTTAATGCTAGAGCTTCAAAAAGTATTTCTCCATTGACCCATAATTGGATGCACAACATTAATGGTCAATTTTTGAGCTCTAAATCATCTTTAACAGCGGATCATCATGATAAGAAGCTGCCATGGGAGTTACCAGAAGATCAAAATAATAATAGCAATAACATGTTACTTAATGCAGAGAATGTGACTAAGATTGCTTCTGACCCTAAATTTAGGGTTGCTGTTGCAGCTGCTATTTCATCTATCATTAGTACTAATGATCAGGCCCACATGACACCTAGTTCCAGTACTACATCTCGGGCAGGATCAACATCTTTCGGGCAGCGCTGGGATGGGGAAATGGGCAGCTCCGGTGGTGGGGCTGGGAAGAACAACTGGATCCTTGAATCGTTTTCGGCAAATGGTTGA 1500 41.07 MIGIDLTLKVDEKEVESESESVAAAAGKDHDHDHTEDAAEITAVGEVLEDNSSLMAETSHPHHNNNTEFELSVLQKEMDRMKEENNLLRNVVEQTMKDFYDLQTKFTITQQHNQIKNLSLHGYNHHEEEQKEIPKVDLHHEDRGIIRENELGLSLGLHTSSSSYDHHQIRDQDHKEKNKEAHDMITSTTTATTTGNSNLGQNKLHYQPSDFPGIANHVSAPPNRKDRVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGAAAMASTTSAAAVAAAANSLSNTSYHNFPLINPSTFLHPSITNHLKITNPNDPLLEFSLNNNVNARASKSISPLTHNWMHNINGQFLSSKSSLTADHHDKKLPWELPEDQNNNSNNMLLNAENVTKIASDPKFRVAVAAAISSIISTNDQAHMTPSSSTTSRAGSTSFGQRWDGEMGSSGGGAGKNNWILESFSANG 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4905876 4908001 + Conep03aG0097600.1 Cone3ag0945 434404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0945 499 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 41 452 IPR044810 GO:0003700(InterPro)
Cone3ag0945 499 Gene3D WRKY domain 224 301 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0945 499 Coils Coil 64 98 - -
Cone3ag0945 499 MobiDBLite consensus disorder prediction 157 181 - -
Cone3ag0945 499 SMART WRKY_cls 239 299 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0945 499 MobiDBLite consensus disorder prediction 164 181 - -
Cone3ag0945 499 MobiDBLite consensus disorder prediction 451 475 - -
Cone3ag0945 499 Pfam WRKY DNA -binding domain 240 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0945 499 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0945 499 FunFam probable WRKY transcription factor 31 224 301 - -
Cone3ag0945 499 MobiDBLite consensus disorder prediction 451 489 - -
Cone3ag0945 499 SUPERFAMILY WRKY DNA-binding domain 232 300 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0326 Cone-Chr20:1457470 Cone3ag0945 Cone-Chr3:4905876 9.62E-22 dispersed
Cone20ag1141 Cone-Chr20:7768393 Cone3ag0945 Cone-Chr3:4905876 3.98E-23 dispersed
Cone3ag0945 Cone-Chr3:4905876 Cone8ag1424 Cone-Chr8:11102295 4.27E-41 dispersed
Cone3ag0945 Cone-Chr3:4905876 Cone3ag1328 Cone-Chr3:32232091 4.02E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45831 PF00069 Pkinase 1.40E-59 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0945 - - - 0.0