Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0976 ATGGAAATGGGAGGTCATGGTTTTGGTTTTGATATGTGGAAGGCTGTTCAAAATTGTCTTTGGTTCGGGCTTGTTCTTATCGCCTGGCATTTGCTCTTTGATAAAAAGGTTGAGAGGGAAACCAAAAGCGATGTACTTAACACTGTCACTAAAATATTGATCTGTCTCTTAGTGGGCACTTTAGTGTGGTTGGTCAAGACTCTAATGGTTAAGGTTTTGGCTTCTTCTTTCCATGTTCCGGCATCCTCTTCTCCAACAAGTGGAAAAGTAATTGGCAGTGGAAGGTTCCCGAAAAGTCCACGATTAAGTCCCATATTTTCTGGGTCAGCTCCAAGGAAGGGGGAAGAAGGTATATCAATTGGGCACTTGCATAGGTTGAGCCCAAAGAATGTCTCTGCTTGGAATATGAAGAGATTAATTAACATTATCCAATATGGGCCTCTCTCCACATTGGATGAGCAGATACAAGGTGCTAGTCAAGAGGATGAGTCTGCTACTCAGATTAAAAGTGAATTTCAAGCAAAGGCTGCAGCAAAGAAAATTTTTCTTAATGTGGCTAGAAGTGGGTCAAGGTACATCTACATGGAGGACTTGATGCACTTTTTGAATGAGGATGAGGCTATTAAGACCATGAGTCTTTTTGAAGGAGCTTCCGAGAGCAAGAAAATATGCAAATCATCCTTGAAGAACTGGGTGAACACCCAAATATTTTTTGTGATTCGAATTTCTAACTTCCAATCTCCACTATGGGAGTCAATGCTTTTAGAGAGCGGAGAGCGCTTGCTAACACTCGATGATACCAAAACTGCCGTGAACAAACTTTATCATATGGTGAATGCTCTAGTATGCATTGTGATATTGATTATTTGGCTGCTAATACTAGGAATCGCTACCACAAAATTTCTCCTCTTGCTAAGCTCTCAACCCGTACTTGCAGTATTTATATTCGGAAATACCTGCAAGACTGTATTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGTGATAGATGTGAGATTGATGGAGTTCAGATGGTTGTGGAAGAGATGAACATCTTGACGACTACCTTTTTAAGATATGACAACCAGAAGATCACTTTTCCAAACAGTGTCCTTGCAACGAAGGCTATTAATAACTACTATGGCAGTCCATACATGGGTGTTGCTGTTGAGTTTTGTGTCCATATTTCTACTAATTATATCGAGGACAAGAAAGAACACTGGTAA 1239 40.11 MEMGGHGFGFDMWKAVQNCLWFGLVLIAWHLLFDKKVERETKSDVLNTVTKILICLLVGTLVWLVKTLMVKVLASSFHVPASSSPTSGKVIGSGRFPKSPRLSPIFSGSAPRKGEEGISIGHLHRLSPKNVSAWNMKRLINIIQYGPLSTLDEQIQGASQEDESATQIKSEFQAKAAAKKIFLNVARSGSRYIYMEDLMHFLNEDEAIKTMSLFEGASESKKICKSSLKNWVNTQIFFVIRISNFQSPLWESMLLESGERLLTLDDTKTAVNKLYHMVNALVCIVILIIWLLILGIATTKFLLLLSSQPVLAVFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTTFLRYDNQKITFPNSVLATKAINNYYGSPYMGVAVEFCVHISTNYIEDKKEHW 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28412780 28416504 - Conep03aG0147100.1 Cone3ag0976 434435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0976 412 Gene3D - 335 384 IPR023408 -
Cone3ag0976 412 FunFam Predicted mechanosensitive ion channel 335 384 - -
Cone3ag0976 412 SUPERFAMILY Sm-like ribonucleoproteins 325 384 IPR010920 -
Cone3ag0976 412 Pfam Mechanosensitive ion channel, beta-domain 328 384 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone3ag0976 412 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 12 79 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0976 Cone-Chr3:28412780 Cone8ag1305 Cone-Chr8:10642036 1.34E-157 dispersed
Cone3ag0976 Cone-Chr3:28412780 Cone10ag1228 Cone-Chr10:9229824 1.40E-212 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0976 K22048 - cit:102621675 470.7