Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0982 ATGGCTCAGGTGCAAGGTCAGCCTCAGAATCCGATGTACGGAGTGAATCCAGCAGCGGCAGCTGCTGCAGTGGCGGCGGCGAACGGCGGAGCGGTTCAGGTTGGGACGACGTCGTTGTATGTTGGAGATCTCGACTTCAATGTCACGGATTCTCAGCTCTATGATCTATTTAATCAGATGGGACAGGTAGCTTCTGTTAGGGTTTGCCGGGATATGACGACCCGACGATCCCTTGGTTATGGATACGTCAACTTTAGCAACGCTCAAGATGCTGAAAGGGCTTTGGATGTGCTGAACTTTACTCCCCTCAATGGAAAAAACATCAGGATTATGTATTCTCATCGTGACCCTAGCATCCGCAAAAGTGGGGCTGGAAATATATTTATTAAAAATTTAGACAAGGGAATTGATCACAAAGCATTACAGGATACCTTTTCTGCATTTGGTAACATCCTTTCTTGTAAGGTGGCTACAGACCCTTCTGGGCAGTCCAAGGGCTATGGTTTTGTCCAATTTGAGACTGAGGAATCTGCCCAAAAAGCTATTGAGAAGTTGAACGGTATGCTGCTGAATGATAAGCAAGTCTATGTGGGACCTTTCCTTCGTAGACAGGAAAGAGAAAATGTCATTGACAGGTCAAGATTCAACAATGTTTTTGTTAAGAATCTCTCGGAGTCGACAACGGAAGAAGATTTGAGTAGAATGTTCAGCGAGTTTGGACCACTCACAAGCTTTGTGGTGATGAGAGATGGGGACGGTAAATCAAGATGCTTTGGATTTGTGAACTTTGAGAATCCAGATGATGCGGCTCGGGCTGTTGATGCTCTGAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTTGGGAAGGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAAAATCGATTTGAACAGAGTATGAAGGAGGCAGCTGACAAGTATCAGGGAGCAAATTTGTATGTGAAAAATTTGGATGATAGTATTTCTGATGAGAAACTCAAGGAGCTGTTTTCTCCATTTGGTACTATTACCTCATGCAAGGTTATGCGGGACCCTAATGGAATAAGTCGAGGATCTGGGTTTGTTGCTTTTTCAACTCCTGAAGAAGCATCTAGAGCACTCTTGGAAATGAATAGCAAAATGGTCGCAAGCAAACCTCTGTATGTAGCTTTAGCACAGAGGAAAGAAGATAGGAAGGCTAGGTTGCAGGCTCAATTTTCTCAGATGAGGCCAGTTGCTATAGCACCTTCTGTTACTCCTCGTATGCCCATGTATCCTCCTGGTGGTCCAGGTATTGGCCAACAAATATTCTATGGCCAACCTCCGCCTGCTATGATTCCTTCCCAGCCTAGCTTTGGTTATCAGCAGCAACTTATTCCTGGTATGAGGCCCGGTGGGGCCCCCATGCCAAATTTCTTTGTCCCGATGGTTCAGCAAGGCCAGCAGGGGCAACGTCCAGTTGGCAGACGTGCCGGGGCTGTTCAGCAAACCCAGCAGCAGCCTGTTCCATTGATGCAGCAGCAGCAGATGCTTCCAAGGGGACGAATCTACCGTTACCCACCTGGACGTGGTATGCCTGAAGTCCCTATGCCTGGTGTTGGTGGAGGAATGTTTTCAGTTCCATATGACATGGGCGGTATGCCTATCCGTGAGCCATCTCTGTCTCAGCCGATTCCACTAGGTGCTCTGGCTACTGCTTTAGCCAATGCTCCTCCAGACCAGCAAAGAACGATTCTGGGAGAGAATCTTTACCCACTTGTGGAACAGCTGGAACCAGACAATGCAGCAAAGGTAACAGGAATGCTTCTTGAGATGGATCAAACCGAGGTTTTGCATTTGCTGGAGTCACCAGAAGCTTTGAAAGCTAAAGTGGCAGAGGCTATGGATGTTCTGAGGAATGTTGCTCAGCAGCAGCAGCAGGGTGGGAATCCAGCAGATAAACTTGCCTCCTTGTCCCTGAATGACAACCTTGTTTCTTGA 1986 47.03 MAQVQGQPQNPMYGVNPAAAAAAVAAANGGAVQVGTTSLYVGDLDFNVTDSQLYDLFNQMGQVASVRVCRDMTTRRSLGYGYVNFSNAQDAERALDVLNFTPLNGKNIRIMYSHRDPSIRKSGAGNIFIKNLDKGIDHKALQDTFSAFGNILSCKVATDPSGQSKGYGFVQFETEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERENVIDRSRFNNVFVKNLSESTTEEDLSRMFSEFGPLTSFVVMRDGDGKSRCFGFVNFENPDDAARAVDALNGKKFDDKEWYVGKAQKKSEREVELKNRFEQSMKEAADKYQGANLYVKNLDDSISDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNSKMVASKPLYVALAQRKEDRKARLQAQFSQMRPVAIAPSVTPRMPMYPPGGPGIGQQIFYGQPPPAMIPSQPSFGYQQQLIPGMRPGGAPMPNFFVPMVQQGQQGQRPVGRRAGAVQQTQQQPVPLMQQQQMLPRGRIYRYPPGRGMPEVPMPGVGGGMFSVPYDMGGMPIREPSLSQPIPLGALATALANAPPDQQRTILGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQQGGNPADKLASLSLNDNLVS 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28625860 28630820 - Conep03aG0147900.1 Cone3ag0982 434441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0982 661 SUPERFAMILY RNA-binding domain, RBD 37 206 IPR035979 GO:0003676(InterPro)
Cone3ag0982 661 Pfam Poly-adenylate binding protein, unique domain 568 633 IPR002004 GO:0003723(InterPro)
Cone3ag0982 661 Gene3D - 127 198 IPR012677 -
Cone3ag0982 661 FunFam Polyadenylate-binding protein 22 122 - -
Cone3ag0982 661 PANTHER RNA BINDING PROTEIN 32 208 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cone3ag0982 661 Gene3D - 202 302 IPR012677 -
Cone3ag0982 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 FunFam Polyadenylate-binding protein 123 206 - -
Cone3ag0982 661 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 638 IPR002004 GO:0003723(InterPro)
Cone3ag0982 661 CDD RRM3_I_PABPs 215 294 - -
Cone3ag0982 661 SMART poly_2 573 636 IPR002004 GO:0003723(InterPro)
Cone3ag0982 661 Gene3D - 303 405 IPR012677 -
Cone3ag0982 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 293 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 FunFam Polyadenylate-binding protein 557 639 - -
Cone3ag0982 661 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 38 634 IPR006515 GO:0003723(InterPro)
Cone3ag0982 661 CDD RRM1_I_PABPs 38 117 IPR034364 -
Cone3ag0982 661 FunFam Polyadenylate-binding protein 207 301 - -
Cone3ag0982 661 SUPERFAMILY PABC (PABP) domain 504 650 IPR036053 GO:0003723(InterPro)
Cone3ag0982 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 197 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 SMART rrm1_1 126 198 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 SMART rrm1_1 38 111 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 SMART rrm1_1 217 289 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 SMART rrm1_1 320 392 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 CDD RRM2_I_PABPs 123 199 IPR045305 -
Cone3ag0982 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 SMART rrm2_1 217 289 IPR003954 GO:0003676(InterPro)
Cone3ag0982 661 SMART rrm2_1 38 111 IPR003954 GO:0003676(InterPro)
Cone3ag0982 661 SMART rrm2_1 126 198 IPR003954 GO:0003676(InterPro)
Cone3ag0982 661 SMART rrm2_1 320 392 IPR003954 GO:0003676(InterPro)
Cone3ag0982 661 MobiDBLite consensus disorder prediction 639 661 - -
Cone3ag0982 661 CDD RRM4_I_PABPs 318 396 - -
Cone3ag0982 661 Gene3D - 25 126 IPR012677 -
Cone3ag0982 661 PRINTS Paraneoplastic encephalomyelitis antigen family signature 339 351 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Cone3ag0982 661 PRINTS Paraneoplastic encephalomyelitis antigen family signature 377 394 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Cone3ag0982 661 PRINTS Paraneoplastic encephalomyelitis antigen family signature 324 339 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Cone3ag0982 661 PRINTS Paraneoplastic encephalomyelitis antigen family signature 216 231 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Cone3ag0982 661 PRINTS Paraneoplastic encephalomyelitis antigen family signature 306 323 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Cone3ag0982 661 Gene3D - 557 640 - -
Cone3ag0982 661 Pfam RNA recognition motif 39 109 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 Pfam RNA recognition motif 127 195 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 Pfam RNA recognition motif 321 389 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 Pfam RNA recognition motif 218 286 IPR000504 GO:0003723(InterPro)
Cone3ag0982 661 FunFam Polyadenylate-binding protein 302 407 - -
Cone3ag0982 661 SUPERFAMILY RNA-binding domain, RBD 216 400 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1075 Cone-Chr12:8843279 Cone3ag0982 Cone-Chr3:28625860 0 dispersed
Cone3ag0982 Cone-Chr3:28625860 Cone4ag1461 Cone-Chr4:11550661 1.67E-209 dispersed
Cone3ag0982 Cone-Chr3:28625860 Cone3ag0985 Cone-Chr3:28639047 0 proximal
Cone18ag0529 Cone-Chr18:2623902 Cone3ag0982 Cone-Chr3:28625860 1.48E-07 transposed
Cone10ag1002 Cone-Chr10:6851848 Cone3ag0982 Cone-Chr3:28625860 0 wgd
Cone3ag0982 Cone-Chr3:28625860 Cone8ag1121 Cone-Chr8:9919319 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0982 K13126 - csv:101219802 1006.13