Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0985 | ATGGCTCAGGTGCATGCTCAGGCTCAAGACGGGAGTGTGAATGCGGCGGAAAATGGCGGAGCTAACCAGCTCCTTTCAACGACGTCGTTGTATGTGGGAGATCTTGAATTCAATGTGACTGATTCGCAGCTCTATGACCTATTCAGTCAGATGGGTCCGGTGGTTTCCGTTAGGGTTTGCAGGGACATGACGACCAGACGATCTCTTGGCTATGGTTATGTCAACTACAGCAACCCGGAAGACGCTGGAAGGGCATTGGAAGCGCTGAACTTTGCTCCTCTTAATGGAAAGAATATCAGAATCATGTACTCCCATCGCGACCCTAGTGTTCGCAAAAGTGGAGCTGGAAATATTTTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCATTACTAGATACATTTTCGGTATTTGGAAACATCCTCTCTTGTAAGGTAGCTACAGACTCTTCTGGCCAGTCGAAAGGCTATGGTTTTGTGCAATTCGATAGTGAGGAATCTGCCCAGAAAGCTATAAAGAAGTTGAATGGTATGCTGCTGAATGACAAGCAAGTTTTTGTGGGGCCTTTCCTTCGAAGACAGGAAAGAGAAAGTGTTGCTGACAAGTCCAAATTCAACAATGTCTTCGTTAAGAATATCTCTGAGTTGGTAACTGAAGACGATTTGAACAAAACTTTTGGAGAGTTTGGAGCACTCACTAGTGTTGTGGTAATGAGGGATGGGGATGGTAAATCAAAAGGCTTTGGATTTGTGAACTTTGAGAATGCAGACGATGCTGGTAAGGCCGTTCAGGCTCTGAATGGAAAGAAGTTTGATGACAAGGAATGGTACGTTGGTAGAGCCCAGAAGAAATACGAGAGAGAGGTTGAACTAAAAAGTCGCTTTGAGCAGAATGTGAAGGAGACTGCTGATAAGTATCAGGGAACAAACTTATATTTTAAAAATTTAGATGATAGCATTGGTGATGAGAAACTTAATGAGATTTTCTCTCCCTTTGGTACCATAGCCTCCTGCAAGGTTATGCGGGACCCTAATGGAATAAGTAGAGGGTCTGGGTTTGTTGCCTTCTCAACTCCCGAAGAAGCATCTAGAGCCCTCTCTGAAATGAATGGAAAAATGGTTATGAGCAAGCCTCTGTATGTTGCACTTGCTCAAAAGAAAGAAGATAGAAGGGCTAGGTTGCAGGCTCAATTTTCTCAGATGCGGGTAGTTGGAATGCCAACTTCAGTGGGTCCCCGCATGCCAATATATCCCCCAGGTGGTCCAGGTATTGGACAGCAAGTATTCTATGGCCAAGCTCCACCTGCTATGATTCCCTCTCAGCCTGGCTTTGGTTATCAGCAGCAACTCATTCCTGGTATGAGGCCAGGTGGGCCCCCCATGCCGAACTATTTTGTACCAATGGTTCAACAGCAGGGTCAACGTCCAGGTGGTCGACGAACTGGAACTGTCCAGCAAAGCCAGCAGCAGCCTCTTCCCCTAATGCAGCAACAGATGCTTCCAAGGGGGCACATCTATCGTTATCCTCCTGCTCGAGGCGTGCCTGGTGTTGCTGGAGGAGAGTTTTCAGTTCCGTTTGAGATGGGACCTCCACAGCCAGTTCCTTCGGGTTTCTTGGCTACTGCTCTGGCTAATGCTTCTCCGGAACAGCAGAGAACGATACTGGGTGAAAGTCTTTACCCGCTCGTGGAAAAGCTAGAGTCGGACAATGCGGCTAAGGTAACTGGAATGCTTCTCGAGATGGATCAAACTGAGGTTCTACATCTGCTTGAATCACCAGAAGCTTTGAAAGCTAAAGTGGCTGAGGCTTTGGATGTTTTGAGAAATGTTGCTCAGCAGCATCAACAGACCGGCAATGCAGCCGCTGATCAATTGGCCTCATTGTCGCTAACTGGCAACCTTGTTTCTTGA | 1914 | 46.6 | MAQVHAQAQDGSVNAAENGGANQLLSTTSLYVGDLEFNVTDSQLYDLFSQMGPVVSVRVCRDMTTRRSLGYGYVNYSNPEDAGRALEALNFAPLNGKNIRIMYSHRDPSVRKSGAGNIFIKNLDKAIDHKALLDTFSVFGNILSCKVATDSSGQSKGYGFVQFDSEESAQKAIKKLNGMLLNDKQVFVGPFLRRQERESVADKSKFNNVFVKNISELVTEDDLNKTFGEFGALTSVVVMRDGDGKSKGFGFVNFENADDAGKAVQALNGKKFDDKEWYVGRAQKKYEREVELKSRFEQNVKETADKYQGTNLYFKNLDDSIGDEKLNEIFSPFGTIASCKVMRDPNGISRGSGFVAFSTPEEASRALSEMNGKMVMSKPLYVALAQKKEDRRARLQAQFSQMRVVGMPTSVGPRMPIYPPGGPGIGQQVFYGQAPPAMIPSQPGFGYQQQLIPGMRPGGPPMPNYFVPMVQQQGQRPGGRRTGTVQQSQQQPLPLMQQQMLPRGHIYRYPPARGVPGVAGGEFSVPFEMGPPQPVPSGFLATALANASPEQQRTILGESLYPLVEKLESDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEALDVLRNVAQQHQQTGNAAADQLASLSLTGNLVS | 637 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 28639047 | 28643821 | - | Conep03aG0148200.1 | Cone3ag0985 | 434444 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0985 | 637 | SMART | rrm1_1 | 208 | 280 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | SMART | rrm1_1 | 29 | 102 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | SMART | rrm1_1 | 311 | 383 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | SMART | rrm1_1 | 117 | 189 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 310 | 387 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | SUPERFAMILY | RNA-binding domain, RBD | 27 | 196 | IPR035979 | GO:0003676(InterPro) | |
| Cone3ag0985 | 637 | Gene3D | - | 532 | 615 | - | - | |
| Cone3ag0985 | 637 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 28 | 106 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | FunFam | Polyadenylate-binding protein | 21 | 113 | - | - | |
| Cone3ag0985 | 637 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 284 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | SMART | rrm2_1 | 117 | 189 | IPR003954 | GO:0003676(InterPro) | |
| Cone3ag0985 | 637 | SMART | rrm2_1 | 311 | 383 | IPR003954 | GO:0003676(InterPro) | |
| Cone3ag0985 | 637 | SMART | rrm2_1 | 29 | 102 | IPR003954 | GO:0003676(InterPro) | |
| Cone3ag0985 | 637 | SMART | rrm2_1 | 208 | 280 | IPR003954 | GO:0003676(InterPro) | |
| Cone3ag0985 | 637 | CDD | RRM2_I_PABPs | 114 | 190 | IPR045305 | - | |
| Cone3ag0985 | 637 | Gene3D | - | 117 | 189 | IPR012677 | - | |
| Cone3ag0985 | 637 | Gene3D | - | 3 | 116 | IPR012677 | - | |
| Cone3ag0985 | 637 | CDD | RRM4_I_PABPs | 309 | 387 | - | - | |
| Cone3ag0985 | 637 | FunFam | Polyadenylate-binding protein | 532 | 614 | - | - | |
| Cone3ag0985 | 637 | Pfam | RNA recognition motif | 30 | 100 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | Pfam | RNA recognition motif | 312 | 380 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | Pfam | RNA recognition motif | 118 | 185 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | Pfam | RNA recognition motif | 209 | 277 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | FunFam | Polyadenylate-binding protein | 198 | 292 | - | - | |
| Cone3ag0985 | 637 | SUPERFAMILY | RNA-binding domain, RBD | 207 | 391 | IPR035979 | GO:0003676(InterPro) | |
| Cone3ag0985 | 637 | FunFam | Polyadenylate-binding protein | 114 | 197 | - | - | |
| Cone3ag0985 | 637 | Pfam | Poly-adenylate binding protein, unique domain | 543 | 608 | IPR002004 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | CDD | RRM1_I_PABPs | 29 | 108 | IPR034364 | - | |
| Cone3ag0985 | 637 | FunFam | Polyadenylate-binding protein | 293 | 398 | - | - | |
| Cone3ag0985 | 637 | PANTHER | RNA BINDING PROTEIN | 23 | 209 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Cone3ag0985 | 637 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 188 | IPR000504 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 536 | 613 | IPR002004 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | SUPERFAMILY | PABC (PABP) domain | 490 | 620 | IPR036053 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | SMART | poly_2 | 548 | 611 | IPR002004 | GO:0003723(InterPro) | |
| Cone3ag0985 | 637 | CDD | RRM3_I_PABPs | 206 | 285 | - | - | |
| Cone3ag0985 | 637 | Gene3D | - | 193 | 293 | IPR012677 | - | |
| Cone3ag0985 | 637 | Gene3D | - | 294 | 400 | IPR012677 | - | |
| Cone3ag0985 | 637 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 29 | 609 | IPR006515 | GO:0003723(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag1003 | Cone-Chr10:6865475 | Cone3ag0985 | Cone-Chr3:28639047 | 0 | dispersed | |
| Cone18ag0529 | Cone-Chr18:2623902 | Cone3ag0985 | Cone-Chr3:28639047 | 1.99E-06 | dispersed | |
| Cone19ag1215 | Cone-Chr19:8459986 | Cone3ag0985 | Cone-Chr3:28639047 | 1.43E-125 | dispersed | |
| Cone3ag0985 | Cone-Chr3:28639047 | Cone8ag1121 | Cone-Chr8:9919319 | 0 | dispersed | |
| Cone3ag0982 | Cone-Chr3:28625860 | Cone3ag0985 | Cone-Chr3:28639047 | 0 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0985 | K13126 | - | csv:101219802 | 955.666 |