Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0985 ATGGCTCAGGTGCATGCTCAGGCTCAAGACGGGAGTGTGAATGCGGCGGAAAATGGCGGAGCTAACCAGCTCCTTTCAACGACGTCGTTGTATGTGGGAGATCTTGAATTCAATGTGACTGATTCGCAGCTCTATGACCTATTCAGTCAGATGGGTCCGGTGGTTTCCGTTAGGGTTTGCAGGGACATGACGACCAGACGATCTCTTGGCTATGGTTATGTCAACTACAGCAACCCGGAAGACGCTGGAAGGGCATTGGAAGCGCTGAACTTTGCTCCTCTTAATGGAAAGAATATCAGAATCATGTACTCCCATCGCGACCCTAGTGTTCGCAAAAGTGGAGCTGGAAATATTTTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCATTACTAGATACATTTTCGGTATTTGGAAACATCCTCTCTTGTAAGGTAGCTACAGACTCTTCTGGCCAGTCGAAAGGCTATGGTTTTGTGCAATTCGATAGTGAGGAATCTGCCCAGAAAGCTATAAAGAAGTTGAATGGTATGCTGCTGAATGACAAGCAAGTTTTTGTGGGGCCTTTCCTTCGAAGACAGGAAAGAGAAAGTGTTGCTGACAAGTCCAAATTCAACAATGTCTTCGTTAAGAATATCTCTGAGTTGGTAACTGAAGACGATTTGAACAAAACTTTTGGAGAGTTTGGAGCACTCACTAGTGTTGTGGTAATGAGGGATGGGGATGGTAAATCAAAAGGCTTTGGATTTGTGAACTTTGAGAATGCAGACGATGCTGGTAAGGCCGTTCAGGCTCTGAATGGAAAGAAGTTTGATGACAAGGAATGGTACGTTGGTAGAGCCCAGAAGAAATACGAGAGAGAGGTTGAACTAAAAAGTCGCTTTGAGCAGAATGTGAAGGAGACTGCTGATAAGTATCAGGGAACAAACTTATATTTTAAAAATTTAGATGATAGCATTGGTGATGAGAAACTTAATGAGATTTTCTCTCCCTTTGGTACCATAGCCTCCTGCAAGGTTATGCGGGACCCTAATGGAATAAGTAGAGGGTCTGGGTTTGTTGCCTTCTCAACTCCCGAAGAAGCATCTAGAGCCCTCTCTGAAATGAATGGAAAAATGGTTATGAGCAAGCCTCTGTATGTTGCACTTGCTCAAAAGAAAGAAGATAGAAGGGCTAGGTTGCAGGCTCAATTTTCTCAGATGCGGGTAGTTGGAATGCCAACTTCAGTGGGTCCCCGCATGCCAATATATCCCCCAGGTGGTCCAGGTATTGGACAGCAAGTATTCTATGGCCAAGCTCCACCTGCTATGATTCCCTCTCAGCCTGGCTTTGGTTATCAGCAGCAACTCATTCCTGGTATGAGGCCAGGTGGGCCCCCCATGCCGAACTATTTTGTACCAATGGTTCAACAGCAGGGTCAACGTCCAGGTGGTCGACGAACTGGAACTGTCCAGCAAAGCCAGCAGCAGCCTCTTCCCCTAATGCAGCAACAGATGCTTCCAAGGGGGCACATCTATCGTTATCCTCCTGCTCGAGGCGTGCCTGGTGTTGCTGGAGGAGAGTTTTCAGTTCCGTTTGAGATGGGACCTCCACAGCCAGTTCCTTCGGGTTTCTTGGCTACTGCTCTGGCTAATGCTTCTCCGGAACAGCAGAGAACGATACTGGGTGAAAGTCTTTACCCGCTCGTGGAAAAGCTAGAGTCGGACAATGCGGCTAAGGTAACTGGAATGCTTCTCGAGATGGATCAAACTGAGGTTCTACATCTGCTTGAATCACCAGAAGCTTTGAAAGCTAAAGTGGCTGAGGCTTTGGATGTTTTGAGAAATGTTGCTCAGCAGCATCAACAGACCGGCAATGCAGCCGCTGATCAATTGGCCTCATTGTCGCTAACTGGCAACCTTGTTTCTTGA 1914 46.6 MAQVHAQAQDGSVNAAENGGANQLLSTTSLYVGDLEFNVTDSQLYDLFSQMGPVVSVRVCRDMTTRRSLGYGYVNYSNPEDAGRALEALNFAPLNGKNIRIMYSHRDPSVRKSGAGNIFIKNLDKAIDHKALLDTFSVFGNILSCKVATDSSGQSKGYGFVQFDSEESAQKAIKKLNGMLLNDKQVFVGPFLRRQERESVADKSKFNNVFVKNISELVTEDDLNKTFGEFGALTSVVVMRDGDGKSKGFGFVNFENADDAGKAVQALNGKKFDDKEWYVGRAQKKYEREVELKSRFEQNVKETADKYQGTNLYFKNLDDSIGDEKLNEIFSPFGTIASCKVMRDPNGISRGSGFVAFSTPEEASRALSEMNGKMVMSKPLYVALAQKKEDRRARLQAQFSQMRVVGMPTSVGPRMPIYPPGGPGIGQQVFYGQAPPAMIPSQPGFGYQQQLIPGMRPGGPPMPNYFVPMVQQQGQRPGGRRTGTVQQSQQQPLPLMQQQMLPRGHIYRYPPARGVPGVAGGEFSVPFEMGPPQPVPSGFLATALANASPEQQRTILGESLYPLVEKLESDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEALDVLRNVAQQHQQTGNAAADQLASLSLTGNLVS 637
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 28639047 28643821 - Conep03aG0148200.1 Cone3ag0985 434444
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0985 637 SMART rrm1_1 208 280 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 SMART rrm1_1 29 102 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 SMART rrm1_1 311 383 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 SMART rrm1_1 117 189 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676(InterPro)
Cone3ag0985 637 Gene3D - 532 615 - -
Cone3ag0985 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 FunFam Polyadenylate-binding protein 21 113 - -
Cone3ag0985 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 SMART rrm2_1 117 189 IPR003954 GO:0003676(InterPro)
Cone3ag0985 637 SMART rrm2_1 311 383 IPR003954 GO:0003676(InterPro)
Cone3ag0985 637 SMART rrm2_1 29 102 IPR003954 GO:0003676(InterPro)
Cone3ag0985 637 SMART rrm2_1 208 280 IPR003954 GO:0003676(InterPro)
Cone3ag0985 637 CDD RRM2_I_PABPs 114 190 IPR045305 -
Cone3ag0985 637 Gene3D - 117 189 IPR012677 -
Cone3ag0985 637 Gene3D - 3 116 IPR012677 -
Cone3ag0985 637 CDD RRM4_I_PABPs 309 387 - -
Cone3ag0985 637 FunFam Polyadenylate-binding protein 532 614 - -
Cone3ag0985 637 Pfam RNA recognition motif 30 100 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 Pfam RNA recognition motif 312 380 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 Pfam RNA recognition motif 118 185 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 Pfam RNA recognition motif 209 277 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 FunFam Polyadenylate-binding protein 198 292 - -
Cone3ag0985 637 SUPERFAMILY RNA-binding domain, RBD 207 391 IPR035979 GO:0003676(InterPro)
Cone3ag0985 637 FunFam Polyadenylate-binding protein 114 197 - -
Cone3ag0985 637 Pfam Poly-adenylate binding protein, unique domain 543 608 IPR002004 GO:0003723(InterPro)
Cone3ag0985 637 CDD RRM1_I_PABPs 29 108 IPR034364 -
Cone3ag0985 637 FunFam Polyadenylate-binding protein 293 398 - -
Cone3ag0985 637 PANTHER RNA BINDING PROTEIN 23 209 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cone3ag0985 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723(InterPro)
Cone3ag0985 637 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 536 613 IPR002004 GO:0003723(InterPro)
Cone3ag0985 637 SUPERFAMILY PABC (PABP) domain 490 620 IPR036053 GO:0003723(InterPro)
Cone3ag0985 637 SMART poly_2 548 611 IPR002004 GO:0003723(InterPro)
Cone3ag0985 637 CDD RRM3_I_PABPs 206 285 - -
Cone3ag0985 637 Gene3D - 193 293 IPR012677 -
Cone3ag0985 637 Gene3D - 294 400 IPR012677 -
Cone3ag0985 637 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 29 609 IPR006515 GO:0003723(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1003 Cone-Chr10:6865475 Cone3ag0985 Cone-Chr3:28639047 0 dispersed
Cone18ag0529 Cone-Chr18:2623902 Cone3ag0985 Cone-Chr3:28639047 1.99E-06 dispersed
Cone19ag1215 Cone-Chr19:8459986 Cone3ag0985 Cone-Chr3:28639047 1.43E-125 dispersed
Cone3ag0985 Cone-Chr3:28639047 Cone8ag1121 Cone-Chr8:9919319 0 dispersed
Cone3ag0982 Cone-Chr3:28625860 Cone3ag0985 Cone-Chr3:28639047 0 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0985 K13126 - csv:101219802 955.666