Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0992 | ATGGATTCAGAATCCCCTGATTCCTCAACAGTAATTCCTCCCAAATCTACTGATGCCAGACCTTCTGAATCACAACCCCAAGCAGCAGATGATTCAGGATTGGACAGCTCTGCTCCTAGTATTTCATCTAAGTTATCTGCTTCAGGAATAACATCCTGGGCCAGAAATTTGAAAATTCCACAGCCATTGGCACCCACTCAAGATGAATCCCCTTCTGAGAATTCTGCAAAGTCAACGTTTTTGCGTTTTACTACTAGTTTAGGCCTGCGCTTGTCTCCTAAAGCTCCCGTGCAGGATGATAGCCCTGATGGTACTTCAACTACTGCACAACCTGGCTTGTTTGGAACAATTACAAAGGGATTGGTGGATTCTTCTAAGAGTGCTGTAAAGGCTGTGCAGGTGAAAGCTCGGCATGCTGTATCACAAAATAAAAGGAGATATCAGGAGCGTGGATTTGATTTGGACATGTCATATATCACAGAGAATATAATCGCTATGGGGTTCCCTGCTGGTGATATGAGCTCAGGGTTTTTTGGATATGTTGAGGGTTTCTACCGGAACCACATGGAAGAAGTTATTAAGTTCTTTGAAACACACCATAAGGGAAAGTACAAAGTTTACAATCTTTGTTCCGAGAGACTGTATGATGCATCATTACTTGAAGGAAAGGTTGCTTGTTTTCCTTTTGATGACCACAATTGCCCTCCAACTCAACTGATAATATCATTCTGTCAAAGTGCTTATTCGTGGTTGAAGGAAGATATTGAAAATGTTGTGGTAGTGCATTGCAAGGCCGGAATGGCGAGGACAGGATTGATGATTTGCAGTCTTCTTCTATTCCTGAAGTTCTTTCCAACTGCGGAGGAGTGCATCGACCACTACAATCAGAAAAGGTGTTTTGATGGTAAAGGCCTTGTTCTGCCAAGTCAGATACGATATGTAAAATATTTCGAGCGTATTTTAACGTACTTCAATGGTGAGAATCCACCTGGACGGAGGTGCATGCTTAGAGGATTCCGGCTCCACGGGTGTCCCTATTGGATCAGGCCCTCTATTACTGTCTCTGATCATAGCGGGGTTCTTTTCTCATCTAAGAAACATCCAAGAACCAAGGATCTCTCGCCTGAAGATTTTTGGTTTAGTGCACCAAAGAAGGGAGTAATGGTGTTTGCTCTACCTGGTGAACCTGGTATAGCTGAAGTGACCGGTGACTTCAAGATCCATTTCCATGACCGACAAGGAGATTTCTACTGTTGGCTAAACACAACCCTGACAGAAAATCGAAAAATTCTCACCACCAGCGAGCTTGATGGGTTTGACAAGAGGAAACTACCTTCTCCAGGATTTCAAGTCGAGGTAGTTCTGGTTGATTATAATGCCGGCATTCCAATAATACCTTCTACTCCAAATACTACAACCAAGAAAGATGAAAGCTTGGTTTCAATACCCACTTCAACCAATAACGACAACTCAATTCCTCCAAATCAGAAAGAAATTCCCGATTCAAATGACAAAGATGATGTATTTTCAGACAATGAAGGAGATGACAATGCCTCTTCAAAGAGCAAGAGAGAAAGTACATCCAATCCGGTAAAAGCTCCCACAACCAATCCCACCTCCAATTCTAAAACTGGTACAAGTTCGGACCAAGTTTCAAGCATAACACAAGCGGCAAAACAAGTTTCTCTTGGGAATAGTGGGTCCACGGAAGTTGAGACTAACAATAGTGAGCCGAGAAGTGAGGTAAGTGGAGGAGCTGTTTCTGAAGTTTCAAATTCGGCTAGTGATTTTAAGGTTATGGCTGCTGATGCTTCTGTTTTCACATTTGGAGACGAGGAAGATTATGAGAGTGAGTAA | 1857 | 42.7 | MDSESPDSSTVIPPKSTDARPSESQPQAADDSGLDSSAPSISSKLSASGITSWARNLKIPQPLAPTQDESPSENSAKSTFLRFTTSLGLRLSPKAPVQDDSPDGTSTTAQPGLFGTITKGLVDSSKSAVKAVQVKARHAVSQNKRRYQERGFDLDMSYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLLEGKVACFPFDDHNCPPTQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFPTAEECIDHYNQKRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPGRRCMLRGFRLHGCPYWIRPSITVSDHSGVLFSSKKHPRTKDLSPEDFWFSAPKKGVMVFALPGEPGIAEVTGDFKIHFHDRQGDFYCWLNTTLTENRKILTTSELDGFDKRKLPSPGFQVEVVLVDYNAGIPIIPSTPNTTTKKDESLVSIPTSTNNDNSIPPNQKEIPDSNDKDDVFSDNEGDDNASSKSKRESTSNPVKAPTTNPTSNSKTGTSSDQVSSITQAAKQVSLGNSGSTEVETNNSEPRSEVSGGAVSEVSNSASDFKVMAADASVFTFGDEEDYESE | 618 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 28728692 | 28734006 | + | Conep03aG0149100.1 | Cone3ag0992 | 434451 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0992 | 618 | MobiDBLite | consensus disorder prediction | 91 | 112 | - | - | |
| Cone3ag0992 | 618 | CDD | PTP_PTEN | 155 | 320 | IPR045101 | GO:0016791(InterPro) | |
| Cone3ag0992 | 618 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 238 | 298 | IPR000387 | GO:0016311(InterPro) | |
| Cone3ag0992 | 618 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 145 | 324 | IPR029023 | - | |
| Cone3ag0992 | 618 | MobiDBLite | consensus disorder prediction | 523 | 589 | - | - | |
| Cone3ag0992 | 618 | ProSiteProfiles | C2 tensin-type domain profile. | 331 | 458 | IPR014020 | - | |
| Cone3ag0992 | 618 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 261 | 271 | IPR016130 | GO:0016311(InterPro) | |
| Cone3ag0992 | 618 | MobiDBLite | consensus disorder prediction | 464 | 589 | - | - | |
| Cone3ag0992 | 618 | Gene3D | Protein tyrosine phosphatase superfamily | 130 | 327 | IPR029021 | - | |
| Cone3ag0992 | 618 | MobiDBLite | consensus disorder prediction | 464 | 498 | - | - | |
| Cone3ag0992 | 618 | Pfam | PTEN2, C2 domain | 331 | 459 | - | - | |
| Cone3ag0992 | 618 | SMART | PTEN_C2_2 | 329 | 457 | IPR014020 | - | |
| Cone3ag0992 | 618 | MobiDBLite | consensus disorder prediction | 499 | 522 | - | - | |
| Cone3ag0992 | 618 | Gene3D | - | 333 | 458 | - | - | |
| Cone3ag0992 | 618 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 132 | 559 | IPR051281 | GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER) | |
| Cone3ag0992 | 618 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Cone3ag0992 | 618 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 | 130 | 327 | - | - | |
| Cone3ag0992 | 618 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 226 | 279 | - | - | |
| Cone3ag0992 | 618 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 158 | 325 | IPR029021 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0143 | Cone-Chr12:739465 | Cone3ag0992 | Cone-Chr3:28728692 | 1.74E-90 | dispersed | |
| Cone3ag0992 | Cone-Chr3:28728692 | Cone8ag0143 | Cone-Chr8:749391 | 5.44E-240 | dispersed | |
| Cone10ag1013 | Cone-Chr10:7023423 | Cone3ag0992 | Cone-Chr3:28728692 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0992 | K01110 | - | rcu:8288143 | 888.256 |