Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0994 ATGCTTAACTTCCCCCGTTCTCTCCTCCTCCATTTTCTCATTCTTTCTTGTCTAATTTTCTTTCTGAATCCTTTACAAATCCAATCGATCACTTTACCTTCAGACATTTCAGCTCTCAAAGCCTTCAAATCCTCAATCAAACCCTCTTCAATTCCGTCTTGGTCCTGCCTCGCCACCTGGAACTTCTCCTCCTCCTCCTCACCCGCCGCCGCTGACGTGGACCCATGTTCCCTCCCTCGCCGCACCTTCTTCATCTGCGGCATCCTCTGCAAGTCGGACTCAACCCGAGTTACCCAACTTACCCTCGACTCAGCTGGTTACTCGGGTCAACTCACGCCACTAGTTTCCCAACTCACTCAACTCACCGTACTCGACCTCTCTGATAATTACTTCTTTGGCTCCATCCCACCTTTACTCTCTTCTCTCGTTAATCTCCAAACCTTAACTCTCCGATCCAACTCGTTCACCGGCTCAGTCCCTGACTCACTAACGAACCTCAAATCGTTACAATCATTGGACCTCTCCTACAATTCTCTCTCTGGGCCCCTCCCAAATTCGTTGAAATCACTTCTCAATTTGAGACGACTCGACCTGAGTTTCAACAGACTCACCGGGTCAATCCCGGAACTCCCACCAAACCTACTCGAACTTGCTCTGAAGCACAACTCACTCTCCGGCCCCCTGTTAAAATCGTCTTTCAACGAGTTAACCGAGTTGGAAGTGATCGAACTCAGTGGAAACTCGCTCACCGGAATTTTACCATCCTGGTTCTTCCTCATCCCTTCAATTCAACAAGTGGACCTGGCCAATAACAGCCTGACACGTGTCGAAATCTCCAAACCAGCCGCGTGTATCAGCAGCGACCTCGTGGCCGTCGATTTGGGGTTTAATAAAATCGAAGGGTATGTGCCAATAAATTTCACGGCTTATCCTCTGTTGTCGTCTCTCTCGCTCCGTTACAACCGTCTACGTGGCGCTATTCCATTGGAGTACAGCCAGAAAAAGTCGTTGGTAAGGTTGTACTTGGACGGGAACTTCCTGATTGGAAAACCGCCGCCGACGTTTTTCTCCAGCGGAAAGACGGTTACTGGGAGTTTGGGGAATAATTGCCTGCGGGGATGTCCAGTGAGGTCGCAATTGTGCGCGCCTAAACAGAAACCACTTTCAATTTGCAAAAGGGCTTATCGACATCGACGGAGTTAG 1203 49.46 MLNFPRSLLLHFLILSCLIFFLNPLQIQSITLPSDISALKAFKSSIKPSSIPSWSCLATWNFSSSSSPAAADVDPCSLPRRTFFICGILCKSDSTRVTQLTLDSAGYSGQLTPLVSQLTQLTVLDLSDNYFFGSIPPLLSSLVNLQTLTLRSNSFTGSVPDSLTNLKSLQSLDLSYNSLSGPLPNSLKSLLNLRRLDLSFNRLTGSIPELPPNLLELALKHNSLSGPLLKSSFNELTELEVIELSGNSLTGILPSWFFLIPSIQQVDLANNSLTRVEISKPAACISSDLVAVDLGFNKIEGYVPINFTAYPLLSSLSLRYNRLRGAIPLEYSQKKSLVRLYLDGNFLIGKPPPTFFSSGKTVTGSLGNNCLRGCPVRSQLCAPKQKPLSICKRAYRHRRS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28750106 28751660 + Conep03aG0149300.1 Cone3ag0994 434453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0994 400 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cone3ag0994 400 ProSiteProfiles Leucine-rich repeat profile. 192 214 IPR001611 GO:0005515(InterPro)
Cone3ag0994 400 SUPERFAMILY L domain-like 83 391 - -
Cone3ag0994 400 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 396 IPR053213 -
Cone3ag0994 400 Gene3D Ribonuclease Inhibitor 211 382 IPR032675 -
Cone3ag0994 400 PRINTS Leucine-rich repeat signature 190 203 - -
Cone3ag0994 400 PRINTS Leucine-rich repeat signature 169 182 - -
Cone3ag0994 400 Gene3D Ribonuclease Inhibitor 33 210 IPR032675 -
Cone3ag0994 400 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Cone3ag0994 400 Pfam Leucine Rich Repeat 336 356 IPR001611 GO:0005515(InterPro)
Cone3ag0994 400 Pfam Leucine rich repeat 212 273 IPR001611 GO:0005515(InterPro)
Cone3ag0994 400 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515(InterPro)
Cone3ag0994 400 FunFam Nuclear pore complex protein NUP107 33 209 - -
Cone3ag0994 400 SMART LRR_typ_2 142 165 IPR003591 -
Cone3ag0994 400 SMART LRR_typ_2 236 259 IPR003591 -
Cone3ag0994 400 SMART LRR_typ_2 118 141 IPR003591 -
Cone3ag0994 400 SMART LRR_typ_2 190 217 IPR003591 -
Cone3ag0994 400 SMART LRR_typ_2 166 189 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0994 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1015 Cone-Chr10:7039543 Cone3ag0994 Cone-Chr3:28750106 4.49E-136 wgd
Cone3ag0994 Cone-Chr3:28750106 Cone8ag1111 Cone-Chr8:9876610 6.90E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35