Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag1002 | ATGGCACCGGAAGAGGCAGCACCACTACTATGCACCGGGGTGACAGCATATAGCCCACTGAGCCACTTTGGGCTGAAGCAGAGTGGACTAAGAGGTGGGATATTGGGCCTGGGAGGAGGTGGACATATGGGGGTGAAGATAGCAAAGGCAATGGGTCACCATGTGACAGTCATAAGCTCTTCTTATAAGAAAAGAGAGGAAGCTTTGGGACATCTTGGAGCTGATGAGTACCTGGTCAAATCGGACATAACTCGGATGCAAGAAGCACCTCACTCACTTGATTATATCATTGACATAGTGCCTGTGAACCATCCTCTTGAGCCTCACCTATCTCTACTTAAGCTTGATGGGAAATTGATCTTGATGGGTGTTATTAGTTCCCCTCTCCAATTTGTCTCTCGCTTGCTCCTTCTCGGAAGGAAAACAATAACAGGGAGCTTCATAGGAAGCATGAAGGAGCTTCAAGAAATATTGGAACTCTTCAAAGAGAAAGAATTGACCTCGACGGTTGAAGTCGTCCAGTTAAACATCAACAAGGCTTTTGAACGATTAGAGAAGAATGATGTGAGGTACCGATTTGTCATTGATGTTGACATCAACAAGGCTTGTGTTTCCTTTGTTTGTCAATCGTTGTCCATTTTTTAA | 645 | 44.81 | MAPEEAAPLLCTGVTAYSPLSHFGLKQSGLRGGILGLGGGGHMGVKIAKAMGHHVTVISSSYKKREEALGHLGADEYLVKSDITRMQEAPHSLDYIIDIVPVNHPLEPHLSLLKLDGKLILMGVISSPLQFVSRLLLLGRKTITGSFIGSMKELQEILELFKEKELTSTVEVVQLNINKAFERLEKNDVRYRFVIDVDINKACVSFVCQSLSIF | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 28822246 | 28823246 | - | Conep03aG0150100.1 | Cone3ag1002 | 434461 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag1002 | 214 | Gene3D | - | 3 | 194 | - | - | |
| Cone3ag1002 | 214 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 3 | 166 | IPR036291 | - | |
| Cone3ag1002 | 214 | FunFam | Cinnamyl alcohol dehydrogenase | 12 | 168 | - | - | |
| Cone3ag1002 | 214 | Gene3D | - | 12 | 168 | - | - | |
| Cone3ag1002 | 214 | PANTHER | ALDEHYDE REDUCTASE | 2 | 198 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER) | |
| Cone3ag1002 | 214 | Pfam | Zinc-binding dehydrogenase | 41 | 162 | IPR013149 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone3ag1002 | Cone-Chr3:28822246 | Cone8ag0057 | Cone-Chr8:295123 | 1.42E-60 | dispersed | |
| Cone12ag1069 | Cone-Chr12:8816572 | Cone3ag1002 | Cone-Chr3:28822246 | 2.31E-110 | wgd | |
| Cone3ag1002 | Cone-Chr3:28822246 | Cone8ag1104 | Cone-Chr8:9854077 | 2.62E-108 | wgd | |
| Cone3ag1002 | Cone-Chr3:28822246 | Cone9ag1351 | Cone-Chr9:10131797 | 4.27E-08 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag1002 | K00083 | - | csv:101222395 | 289.271 |