Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1005 ATGGGTTTCTCGGATTTCCGGGCACTCGATGAGAAGTCTCTGATCGAATACGTAAGGACCGTTCCTGCTTTGTCCTCCAAGCTTGGGGATAAGTTGGATGATGTTCAGATTAAGGAAGTCGGAGATGGAAACCTTAATTTCGTCTACATCATCGTCGGATCAAACGGTGGTTCCTTCGTCATCAAGCAGGCTATTCCCTACGTCCGTTGTATAGGTGAATCCTGGCCAATGACAAAAGAGCGAGCCTATTTCGAGGCATTGGCATTGAGAAAGCACGGTCATCTTAGCCCTGATCATGTCCCTGAAGTTTACCACTTTGATCGAACCATGTCTTTAATCGGAATGCAGTACTTAGAACCTCCCCATATAATTCTGAGGAAAGGGCTAATTGCTGGAATTGAGTACCCATGTCTAGCAGAGCACATGTCGGAGTATATGGCAAAGACCCTTTTCTTCACTTCTATGCTTTCTCATTCCACTACAGAGCACAAGAGTGCAGTTGCGGAATTTTGTGGAAATGTAGAGCTCTGTAGGCTGACTGAGCAGGTTATCTTTTCTGACCCTTACAAAATCTCTCAATATAACCGTTGGACTTCTCCATATCTTGACCGTGAAGCTGAGGCGGTTAGAGAGGATAATGCCTTAAAGCTTGAGATTGCTGAGTTGAAATCCAAATTCATCGAGAGAGCCCAAGCTCTCATCCATGGAGATCTCCACACGGGTTCTATAATGGTTACCAATGAGTCAACTCAGGTCATAGACCCAGAATTTGCATTTTATGGGCCTATGGGTTTTGATATTGGAGCATTCATTGGAAACTTGATCTTGGCGTTCTTTGCCCAAGATGGACATGCTGTCGAAGAGAATGATAGAAAAACGTATAAGGAGTGGATTTTGAGGACAACAGAAGAAACATGGAACCTTTTCCGTAAGAAGTTCATTGCTCTTTGGGACGAGAATAAAGATGGTCCGGGCGAAGCATATCTCCCTGCAATCTATAACAATGCCGAGCTTCAGAATCTTGTGCAAGAGAGATATATACTTGATTTGTTTCATGATACTCTTGGTTTTGGAGCTGCTAAGATGATAAGGAGAATTGTTGGAGTAGCTCATGTTGAGGATTTTGAATCGATTACTGATCTTAGCAAGCGAGCAAATTGCGAGCGGAGAGCTCTTGGATTTGCAAAGTTCATTCTCAAACAACGACGAAAATTTTCGGGTATTGGAGAAGTAGTTTCTGCCATTACGCAAGTTGAGTAG 1260 43.41 MGFSDFRALDEKSLIEYVRTVPALSSKLGDKLDDVQIKEVGDGNLNFVYIIVGSNGGSFVIKQAIPYVRCIGESWPMTKERAYFEALALRKHGHLSPDHVPEVYHFDRTMSLIGMQYLEPPHIILRKGLIAGIEYPCLAEHMSEYMAKTLFFTSMLSHSTTEHKSAVAEFCGNVELCRLTEQVIFSDPYKISQYNRWTSPYLDREAEAVREDNALKLEIAELKSKFIERAQALIHGDLHTGSIMVTNESTQVIDPEFAFYGPMGFDIGAFIGNLILAFFAQDGHAVEENDRKTYKEWILRTTEETWNLFRKKFIALWDENKDGPGEAYLPAIYNNAELQNLVQERYILDLFHDTLGFGAAKMIRRIVGVAHVEDFESITDLSKRANCERRALGFAKFILKQRRKFSGIGEVVSAITQVE 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28850130 28852412 + Conep03aG0150400.1 Cone3ag1005 434464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1005 419 PANTHER METHYLTHIORIBOSE KINASE 2 418 - -
Cone3ag1005 419 Pfam Phosphotransferase enzyme family 37 271 IPR002575 -
Cone3ag1005 419 NCBIfam S-methyl-5-thioribose kinase 6 414 IPR009212 GO:0009086(InterPro)|GO:0046522(InterPro)
Cone3ag1005 419 Gene3D - 122 418 - -
Cone3ag1005 419 SUPERFAMILY Protein kinase-like (PK-like) 5 415 IPR011009 -
Cone3ag1005 419 PIRSF MTRK 1 419 IPR009212 GO:0009086(InterPro)|GO:0046522(InterPro)
Cone3ag1005 419 Gene3D Phosphorylase Kinase; domain 1 1 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1005 K00899 - - csv:101222633 696.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0969 Cone-Chr10:6521007 Cone3ag1005 Cone-Chr3:28850130 3.40E-276 transposed
Cone10ag1023 Cone-Chr10:7095481 Cone3ag1005 Cone-Chr3:28850130 1.82E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g639 Blo02g00951 . . . . . Bma05g00679 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1005 Cone10ag1023 . . . . . . . . . Bpe05g00494 . . . . Cmo16g00362 . . . . Cpe14g00280 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006086 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 2 2 2 2 38