Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1009 ATGGCTGATGTTAATCAAAGTGATATTTCTATAGCACAAGTGTGTTGTCAGACAGAAAAATGTAAAACTCCTGCACAAAATCCGAAACCATCAATGAATGATCTTGGCTCCAAAATTCTGACTAGACCATCAGAGGAGAAGGATAATCATGGATGTGAAGGGGGGAACAGCACCTGTGTTGATGAACATGTGCATTCATGGTCCGGGGATGTAACAAAGGATTCTCTTCCTACACAGTTCTGCCCTTGTTCGGAAGTTAGAAATAATCAAAGCAGGATTAGTTCAGACCATCATCAGATTTTATCAGAAGATACGCATAAATCTGGTTCAGAAAATGTAAAGGGAAACCTCTCACAACAAGCACAAAATGATCCAGTAAGAAGTGGCACATTAGTGTCAAGCTGTTTTGATAAGAAACAGCATCTATTATTTTCTGAAAATGGGGTTGAGGATCCTTTGGCTCAAGTACTGGAACAGATACATGAATCATTGGAACAGGAGCCTAACTACAGCTCTGAAATTGAACTCAATCAGCAAACTGAAACTAGCAGTGTGGTGTCCAGCTGCCTCATTGATAAACGATTACAATCAGTTCCTGAAAACATGATTGCAAAGTTCAGTAGTGAAGAATCAAGACTACATTATGAAGATCCGAGCAAGATTAGCCAGCTTGGTTCTGGTGATGCAAAATTTGCACCAAGGTATCCAAATGAAACTAAAAATTTAGCGTCCAATGATATTGCTGGAAAAGTTAGGCCAAAGTCTGAAGTTGGGGCAGATTGTTCACGGACTATGCGCTTGAGAGCAGCCAAGAATTCTAATAAACAATTGGAACCACCCTCTAAAGATGTGCCCCTGAATTCTAGTATTGAAAAATCGGGATTACAGTGTAAAAAGGCAGTTAAGAATTCTCAGAGATTGCCCAAAAAAACAGTCAAGAAATTAGACAAGAGTTATATGAAGAAAAAATATGTGTTGAGATCTAAGGTAGGGAATGACATACATCTGCGTTCAAGGGAAGATGAGAAAGTTAAAGCTCCAGTACCCAGTAAAGAACCTAGTAATATTGTTCAAAATGTTAGTAGGAAAGGAAAAAAAGGTAAGGAGAAGATAGATGAGAAGGGAAAAAACTCTGATGAATTTTCGAGAATCAGAAGACATTTGAGATATTTACTGAACCGAATGGGATATGAACAAAACTTTATTAATGCTTATTCTGCTGAAGGCTGGAAAGGACAAAGTGCAGAGAAATTAAAGCCTGAAAAGGAGCTTCAACGAGCCACTAGTGAAATATTGCGACGAAAGTTAAAAGTTAGAGAGCTATTTCAGCGCCTTGATTCAATATGTGGTGAAGGAAGGCTTCCTGAATCTGTCTTTGATTCTGAAGGAGAAATTGATAGTGAGGATATATTTTGCGCAAAATGTGGTACGAAAGAATTATCAACTGATAATGACATTATACTCTGTGATGGTGCTTGTGACCGTGCATTCCACCAGTTTTGTTTACAACCACCATTGCTAAATGAAGACATTCCACCTGATGACGAAGGATGGTTATGCCCTGCTTGTGATTGCAAAGTTGATTGCATGGATTTGCTTAATGACTATCAAGGAACAAATCTCTTATTTACCGACAGTTGGGAGAAGGTCTATCCTGAGGCAGCTTCTAGTCAAAATCCGGAGGGCACATCAGGTCTTCCTTCAGATGATTCTGCAGATAGTGATTATGATCCTGATGGTCCCCAACTTGATAGTCCCAAAGAAGAATCAAGTTCTGATGAATCTGACTATGCATCTGTAGCTGAGGAATTGGAGACGACCCAACCCAAGGCTGACCTGTATTCAGGTCTTCCTTCTGACGACTCCGAGGATGATAACTATGATCCTAGTGCTCCTGACCTTGATGATTATGTTAAACAGGAAAGTTCAAGTTCTGATTTTACATCCGACTCAGAGGATCTTGCTGGCGTAATTGATGATGATGGGTCTTCTAGGAACAATGATGGCTCCAATGGGCGAGGCTGTAAGAGTGGTAGAAAGATAGGTTTGCTTGCCGATGAGTTGCTATCCATATTGGACTCAGGCCCTGGGCTGGATGGTTCTTTGCCTGTTTCTGGGAACAGGCATGTGGAACGATTGGACTATAAGAAGCTTCATGATAGAAGTTCCAGAAAAGTTGCTCAAGTGTCGCAAAACAGAAATGGAGCCAATGTGCAAGGGACAAAGCATGAGTTAAAAGAGATTGAACAGGGTCCTACTAGAAGAACTCGTCAAAAGCCAACCATTGAAGATATTAATGACTCTAAGACTAAATCACCTGAAGACCCTTCTAAGTCTTGCTGTACTGGTAAAGGGACAAAATCAGCAGGTGGTAGAGGGCTTGGGGAAACTGTAATACAGAAACTTTATGCATCCTTCAATGAAAATCAGTACCCTGACCGAGCTAAGAAAGAAAGGTTAGCACAAGATATAGGAATCACATTTAAGCAGGTTCATAAATGGTTTCTGAACACTCGGTGGAGCACACGGCACTCACCGGCCGCAAAAGCAAAGGTAGGTGAAAGTTCTGCTACTGCAAAGGAGACTCCTACTCCTCTGAAGTCCATTAGACATGAATCTTCTACTCCGACAAGATCCAGAGAGAGAAAGGGTATCTCAGGTTCAGATGCTCGAGTTGAAGAGACACCAAAAGCTGAAGTGCACTCACCGGCCGCAAAAGCAAAGATAGGTGAAATTGCTCCGACTTCAAAGGAGACTCCTACTTCTCAGAAATCCATTAGACAGGAATCTTCTACTCCAACAAGATCCAGAAAGAGAAAGGGTATCTCAGATTCTGATGCTCGAGTTGAAGAGACACCAAAAGCTGAAGTGAAAACAAGCGTTAGAGTCCAGACAAGAAGAAGAAAATCGGCCTCTTAA 2919 41.08 MADVNQSDISIAQVCCQTEKCKTPAQNPKPSMNDLGSKILTRPSEEKDNHGCEGGNSTCVDEHVHSWSGDVTKDSLPTQFCPCSEVRNNQSRISSDHHQILSEDTHKSGSENVKGNLSQQAQNDPVRSGTLVSSCFDKKQHLLFSENGVEDPLAQVLEQIHESLEQEPNYSSEIELNQQTETSSVVSSCLIDKRLQSVPENMIAKFSSEESRLHYEDPSKISQLGSGDAKFAPRYPNETKNLASNDIAGKVRPKSEVGADCSRTMRLRAAKNSNKQLEPPSKDVPLNSSIEKSGLQCKKAVKNSQRLPKKTVKKLDKSYMKKKYVLRSKVGNDIHLRSREDEKVKAPVPSKEPSNIVQNVSRKGKKGKEKIDEKGKNSDEFSRIRRHLRYLLNRMGYEQNFINAYSAEGWKGQSAEKLKPEKELQRATSEILRRKLKVRELFQRLDSICGEGRLPESVFDSEGEIDSEDIFCAKCGTKELSTDNDIILCDGACDRAFHQFCLQPPLLNEDIPPDDEGWLCPACDCKVDCMDLLNDYQGTNLLFTDSWEKVYPEAASSQNPEGTSGLPSDDSADSDYDPDGPQLDSPKEESSSDESDYASVAEELETTQPKADLYSGLPSDDSEDDNYDPSAPDLDDYVKQESSSSDFTSDSEDLAGVIDDDGSSRNNDGSNGRGCKSGRKIGLLADELLSILDSGPGLDGSLPVSGNRHVERLDYKKLHDRSSRKVAQVSQNRNGANVQGTKHELKEIEQGPTRRTRQKPTIEDINDSKTKSPEDPSKSCCTGKGTKSAGGRGLGETVIQKLYASFNENQYPDRAKKERLAQDIGITFKQVHKWFLNTRWSTRHSPAAKAKVGESSATAKETPTPLKSIRHESSTPTRSRERKGISGSDARVEETPKAEVHSPAAKAKIGEIAPTSKETPTSQKSIRQESSTPTRSRKRKGISDSDARVEETPKAEVKTSVRVQTRRRKSAS 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28893546 28902683 - Conep03aG0150800.1 Cone3ag1009 434468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1009 972 MobiDBLite consensus disorder prediction 740 774 - -
Cone3ag1009 972 FunFam Homeobox protein HAT3.1 452 530 - -
Cone3ag1009 972 Pfam PHD-finger 472 523 IPR019787 -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 915 930 - -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 873 901 - -
Cone3ag1009 972 SUPERFAMILY FYVE/PHD zinc finger 461 530 IPR011011 -
Cone3ag1009 972 Gene3D - 796 850 - -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 552 679 - -
Cone3ag1009 972 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 184 951 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Cone3ag1009 972 ProSitePatterns Zinc finger PHD-type signature. 472 523 IPR019786 -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 552 570 - -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 637 651 - -
Cone3ag1009 972 CDD homeodomain 799 845 IPR001356 GO:0003677(InterPro)
Cone3ag1009 972 SMART HOX_1 788 849 IPR001356 GO:0003677(InterPro)
Cone3ag1009 972 MobiDBLite consensus disorder prediction 22 53 - -
Cone3ag1009 972 SUPERFAMILY Homeodomain-like 797 844 IPR009057 -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 22 38 - -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 931 963 - -
Cone3ag1009 972 ProSiteProfiles 'Homeobox' domain profile. 799 845 IPR001356 GO:0003677(InterPro)
Cone3ag1009 972 Pfam Homeodomain 798 840 IPR001356 GO:0003677(InterPro)
Cone3ag1009 972 MobiDBLite consensus disorder prediction 111 128 - -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 580 594 - -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 338 378 - -
Cone3ag1009 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 528 IPR013083 -
Cone3ag1009 972 CDD PHD_PRHA_like 471 523 IPR045876 -
Cone3ag1009 972 SMART PHD_3 471 524 IPR001965 -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 844 972 - -
Cone3ag1009 972 ProSiteProfiles Zinc finger PHD-type profile. 469 526 IPR019787 -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 857 872 - -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 362 378 - -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 718 792 - -
Cone3ag1009 972 MobiDBLite consensus disorder prediction 104 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1009 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0201 Cone-Chr11:1004832 Cone3ag1009 Cone-Chr3:28893546 3.80E-56 transposed
Cone10ag1026 Cone-Chr10:7151963 Cone3ag1009 Cone-Chr3:28893546 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45834 PF04893 Yip1 7.20E-12 CL0112 Cone TF