Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1012 ATGGCGCCCATTAATGTTCGTTCCTTAGAACAGAGGTATATTGATTTTTGTACGAGGCATGGAGTCTCACCAAATACTGCAATTTTATCTTCTCTCTTCAAGGTTTCTTCTGACACATCATCAAATTCTAGTGAAGAAAGATCATGCAAACGGCACAGACTTGATGTTTCATTGAAGCATATATCTTCTCATGCTTCGCCGATTTGCTTTGAGAAACATTATAGAGAGTACATGATAGCTTCATTACCAAGCTTAAAAGTCTTAGACGACTTACCAATTAGAACAATGGACAAGGAAAGTGCTACAAACATATTTTCACAATACTTCGAGCATCTTCCATACAGACAAAAGCATAAAGAGAGTTTAGTCAGTGTGTTAATGAATCGTGAAATCAGAGCAAGCCATCCTCATGTGTTGACTTCCAAGGGAAAGTCAACATATCCTTCCGGAAAGTCTCAACAGTTTTATGCCAGATCTCTTTCTGCAGCAAAAGTTGGTTCTTCTGCTTGGCCTTTTTTGCATACTCTTTCTATTTCAGGTGGAGATTTAGGAGATGAAAGGAGTAGGAGGTTTCGTCCAAGGCAGTTTGAGTACCATCCTTCGGACCCAAGCCTAATGGTCTGTGGAACTTTGGATGGTGAAGTAATGGTGGTGAACCATGAGAATGAAAAAATTGTTAGTTATATCCCATCACTTGGATTAATGAATAATGTTTTGGGACTCTCTTGGCTCAAGAAGTATCCATCCAAGCTTATAGCTGGTTCAGACAATGGTTCACTAAAATTATACGATATTCGAAACATGCCACCTACACTCAAAGGCCCGTCTGGTGCCAGTGCTGGTTCTGTTACCTTTGATGAGTTTGACCTATTAACATCTGTTCATGTTAATTCCACGGACGAACTATTTCTGGCAAGTGGGTACTCACGAAATGTCGCACTATATGACATCAGCACCGGAAAACGGTTAGAGATGTTCACCGATATGCACCGAGAGCATATCAACGTAGTGAAGTTCTCACATCACTCCCCTTCAATTTTTGCTACTTCTTCATTCGATCAAGATATCAAGATGTGGGATTTGAGACAAAAACCGATCCGGCCCTGTTATACCACTTCAAGCTCTAGGGGAAATGTGATGGTTTGCTTCTCGCCAGATGATCAGTACCTTCTCTCATCTGCTGTAGACAATGAGGTTAGACAACTTCTGGCAGTTGATGGTAGGGTCCACGTGAATTTTGAGATACCTTCAATGGGAAGCTCGCAGAATTACACCAGGTCTTATTACATGAATGGAAGAGACTGTATTATTAGCGGGAGTTGTGATGAACATGTGGTTCGCATCTGTTGTGCTCAGACAGGAAGGCGACTAAGAGATATATCTTTGGAGGGAAGAGGTTCGAGGAGTACTATGTATGTGCAATCTTTGAGGGGCGATCCTCTTAGAGATTTTAACATGAGCATCTTAGCGGCCTATATTCGGCCGAGCTCGAGATCTGAAATCGTCAAGGTAAATTTGCTAGCATCGAGTGATCATGACAAGGAGTACCCGTATAATCAGAATTCGTGTCAGGCTAATAGATTGGGAGGTTGA 1593 41.62 MAPINVRSLEQRYIDFCTRHGVSPNTAILSSLFKVSSDTSSNSSEERSCKRHRLDVSLKHISSHASPICFEKHYREYMIASLPSLKVLDDLPIRTMDKESATNIFSQYFEHLPYRQKHKESLVSVLMNREIRASHPHVLTSKGKSTYPSGKSQQFYARSLSAAKVGSSAWPFLHTLSISGGDLGDERSRRFRPRQFEYHPSDPSLMVCGTLDGEVMVVNHENEKIVSYIPSLGLMNNVLGLSWLKKYPSKLIAGSDNGSLKLYDIRNMPPTLKGPSGASAGSVTFDEFDLLTSVHVNSTDELFLASGYSRNVALYDISTGKRLEMFTDMHREHINVVKFSHHSPSIFATSSFDQDIKMWDLRQKPIRPCYTTSSSRGNVMVCFSPDDQYLLSSAVDNEVRQLLAVDGRVHVNFEIPSMGSSQNYTRSYYMNGRDCIISGSCDEHVVRICCAQTGRRLRDISLEGRGSRSTMYVQSLRGDPLRDFNMSILAAYIRPSSRSEIVKVNLLASSDHDKEYPYNQNSCQANRLGG 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28957029 28962270 - Conep03aG0151100.1 Cone3ag1012 434471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1012 530 Gene3D - 188 481 IPR015943 GO:0005515(InterPro)
Cone3ag1012 530 Gene3D Ribonuclease Inhibitor 38 112 IPR032675 -
Cone3ag1012 530 SUPERFAMILY WD40 repeat-like 192 460 IPR036322 GO:0005515(InterPro)
Cone3ag1012 530 PANTHER BNAC09G30780D PROTEIN 41 529 IPR046377 GO:0071493(InterPro)|GO:0080008(InterPro)
Cone3ag1012 530 Pfam DWD hypersensitive to UV-B 1, N-terminal 54 106 IPR048514 -
Cone3ag1012 530 SMART WD40_4 281 316 IPR001680 GO:0005515(InterPro)
Cone3ag1012 530 SMART WD40_4 184 219 IPR001680 GO:0005515(InterPro)
Cone3ag1012 530 SMART WD40_4 319 360 IPR001680 GO:0005515(InterPro)
Cone3ag1012 530 SMART WD40_4 222 264 IPR001680 GO:0005515(InterPro)
Cone3ag1012 530 SMART WD40_4 365 403 IPR001680 GO:0005515(InterPro)
Cone3ag1012 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 362 IPR001680 GO:0005515(InterPro)
Cone3ag1012 530 Pfam WD domain, G-beta repeat 330 360 IPR001680 GO:0005515(InterPro)
Cone3ag1012 530 Pfam WD domain, G-beta repeat 379 400 IPR001680 GO:0005515(InterPro)
Cone3ag1012 530 SMART LRRcap_2 71 89 IPR003603 -
Cone3ag1012 530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1012 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1029 Cone-Chr10:7184912 Cone3ag1012 Cone-Chr3:28957029 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g664 . . Bda06g01214 . Bpe07g00264 . . Bma12g00269 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1012 Cone10ag1029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015699 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 10