Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1016 ATGAAATCGTGTTACAGGCCATTAGAGAGGTTTTTAGGTCGAAGAGGTAGTAGCTCTAATGGCGATGGGCTTTTATGGCACGCGGAATTGAAGCCTCATGCATCTGGAGATTACTCGGTCGCTGTGGTTCAAGCCAATTCGAGCCTTGAAGATCAGAGTCAAGTTTTTACGTCTCCCTCTGTTTCCTATTTTGGTGTCTATGATGGCCATGGCGGCCCTGAAGCTTCTCGCTTTGTTAACAAGTTTCTCTTTCCTTATTTGCACAAATTCACTACCGAACAAGGGGGATTGTCAGCCGATGTAATAAAGAAAGCTTTCGATGCAACCGAGGAAGAATTCTTAAACTTGGCAAAACGGGCAATGCCAGCCTTGCCACAAATCGCTTCAGTCGGGTCATGCTGTCTTGTGGGTGCAATCTCAAATGATAATAAGTTGTACGTCGCAAATCTGGGGGACTCGAGAGCAGTTCTTGGCCGGAAAGGCAGTCCTTCATCAGAGAGGAAGAAAGGGGTTATTGTGGCCGAGCGGTTATCAACTGATCATAATGTGGCGGTTGAGGAAGTTAGGAAAGAAGTCGAAGCTCTTCATCCTGATGATTCTCACATCGTGGTTTATAATCATGGGGTTTGGAGGATCAAGGGCATCATTCAGGTATCGAGATCTATAGGGGATGTTTATCTGAAGAATCCCGAAGTTAGCCAGGATGCCATTTTCCGACAATTTGGATTCCCTATTCCTTTGAAACGGGCAGTGATAACATCAGAACCGTCGATTCTAGTCAGAAAGCTTACTCCGCAGGACATGTTCCTAATATTCGCATCAGACGGCCTTTGGGAACAATTAACCGATCAAGCCGCTATTAATATTGTTTCTAACAACCCAAGAGCGGGGATTGCGAGGAGATTGGCGAGGGCTGCAGTTGAAGAGGCGGCAAGGAAGAGAGAGATGAGATATGATGAGATGAAGAAAATCGAAAAGGGAAGGAGACGGCATTTCCACGACGACATCACTGTTATTGTCGTTTATCTTGATCATCATTGCAGTAGCTCTAGATCCTCCTCCTTGCCCGGTAGAGTTGGCGGCAATCAAATTGGTAGCACTAGCTCGCCCTCCGATATTTTCTCCCTAAGTGCAGATGAAAATTAG 1146 45.99 MKSCYRPLERFLGRRGSSSNGDGLLWHAELKPHASGDYSVAVVQANSSLEDQSQVFTSPSVSYFGVYDGHGGPEASRFVNKFLFPYLHKFTTEQGGLSADVIKKAFDATEEEFLNLAKRAMPALPQIASVGSCCLVGAISNDNKLYVANLGDSRAVLGRKGSPSSERKKGVIVAERLSTDHNVAVEEVRKEVEALHPDDSHIVVYNHGVWRIKGIIQVSRSIGDVYLKNPEVSQDAIFRQFGFPIPLKRAVITSEPSILVRKLTPQDMFLIFASDGLWEQLTDQAAINIVSNNPRAGIARRLARAAVEEAARKREMRYDEMKKIEKGRRRHFHDDITVIVVYLDHHCSSSRSSSLPGRVGGNQIGSTSSPSDIFSLSADEN 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28992709 28995153 - Conep03aG0151500.1 Cone3ag1016 434475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1016 381 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169(InterPro)
Cone3ag1016 381 FunFam Probable protein phosphatase 2C 42 28 351 - -
Cone3ag1016 381 MobiDBLite consensus disorder prediction 349 381 - -
Cone3ag1016 381 SUPERFAMILY PP2C-like 43 344 IPR036457 -
Cone3ag1016 381 PANTHER PROTEIN PHOSPHATASE 31 342 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone3ag1016 381 Pfam Protein phosphatase 2C 58 312 IPR001932 -
Cone3ag1016 381 Gene3D - 27 353 IPR036457 -
Cone3ag1016 381 SMART PP2C_4 27 341 IPR001932 -
Cone3ag1016 381 ProSiteProfiles PPM-type phosphatase domain profile. 37 343 IPR001932 -
Cone3ag1016 381 CDD PP2Cc 38 343 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1016 Cone-Chr3:28992709 Cone8ag1300 Cone-Chr8:10628497 4.88E-126 dispersed
Cone10ag1033 Cone-Chr10:7202376 Cone3ag1016 Cone-Chr3:28992709 2.24E-254 wgd
Cone12ag1055 Cone-Chr12:8757750 Cone3ag1016 Cone-Chr3:28992709 3.34E-188 wgd
Cone3ag1016 Cone-Chr3:28992709 Cone8ag1089 Cone-Chr8:9794240 1.67E-181 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1016 - - - 0.0