Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1017 ATGTTCGATGGCAGACTCAGTGAAAGTACGAACCAGTTTGTTCCAAGCACAAGTGCCAATAATAACATCTTAGCCAGTACAAATAGGACCACATTGTCCGGGAATGATAGACTTCCTGGAGATGTCCTGCTTGCTAGGGCAAGGCTTTTTCAGAGACTCAGAGGAGAGCCTCTACTCATAAACAGACACATTGACCTGAGACATATTGAAGCAAGGAGCAGAGGTACCGACATCTCAACCCATGGATCACAAAGGCGATCCCCCGCTTTTGAGCTGACTTCTCAAAATGGACGGTTACTATTCACGCCAGAGCTAAACAATAATAGACCTCCGGGTCTGACTCAAAACGAACTTGCAAGTTTGCAAATCGTGGTTTTAAGTTCCAGAGAAATATTGGGTATTGATGGGTCACTTTCAGGAGTTTCGAGGGATTGTAGTATATGTCTTGAGGGGTTCAAACATGGAGACAAGCTCATATGTTTGAAATGCGAACATCGATTTCATAAGGGCTGCTTGTTTCCTTGGATTCAAACTTGTGGAGACTGCCCCAATTGCCGAAAAGGTATATATAGCAGTCGGACTGTAAAAGTTAATGGAGATATATACTGA 609 43.51 MFDGRLSESTNQFVPSTSANNNILASTNRTTLSGNDRLPGDVLLARARLFQRLRGEPLLINRHIDLRHIEARSRGTDISTHGSQRRSPAFELTSQNGRLLFTPELNNNRPPGLTQNELASLQIVVLSSREILGIDGSLSGVSRDCSICLEGFKHGDKLICLKCEHRFHKGCLFPWIQTCGDCPNCRKGIYSSRTVKVNGDIY 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28996159 28996918 - Conep03aG0151600.1 Cone3ag1017 434476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1017 202 SMART ring_2 145 185 IPR001841 -
Cone3ag1017 202 PANTHER SI:CH211-59O9.10 21 189 IPR051834 -
Cone3ag1017 202 SUPERFAMILY RING/U-box 144 192 - -
Cone3ag1017 202 Pfam Ring finger domain 144 186 IPR001841 -
Cone3ag1017 202 ProSiteProfiles Zinc finger RING-type profile. 145 186 IPR001841 -
Cone3ag1017 202 CDD RING-H2_PA-TM-RING 144 186 - -
Cone3ag1017 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 190 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1017 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1017 Cone-Chr3:28996159 Cone5ag1407 Cone-Chr5:8765591 3.60E-08 dispersed
Cone10ag1034 Cone-Chr10:7206922 Cone3ag1017 Cone-Chr3:28996159 1.40E-107 wgd
Cone12ag1054 Cone-Chr12:8755420 Cone3ag1017 Cone-Chr3:28996159 2.58E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g673 . . . . . . . . . Cmo11g01410 . . . . . Cpe04g00318 . . . . . . . . Cla02g00669 Cam02g0703 Cec02g0717 Cco02g0738 Clacu02g0711 Cmu02g0706 Cre02g1021 Cone12ag1054 . Cone3ag1017 Cone10ag1034 Lsi03g00564 Csa07g00697 . Cme01g00109 . . . . . . . . . . . Cma11g01708 . . . . . . . . . . . . . . . . . . . . . Chy01g00119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012540 0 0 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 27