Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1022 ATGGCTAACGATGGCGCTTCCTCTTCTAATCCACAGGTGTTGAATCTTCAGCTGAACTCTATCAAAGAGGAAGATGATGACTTTCTTTCCGGCGGTGAATCTGGTTGGGTTGAAGCTCGTACTTCCTGCGATCATTTGGCCCTTCTCTCCTCCGATCTCTCTCATATTCCTCCTCACAACACATCCTGTAACATATGTGAAAATCCCTGTGAGAATTGGTTATGTTTGTGCTGTGAGAATGTGTTCTGTAGCCGTTTTGTGAACAAGCATATGCTCCAACATTATCAAACAACAAATCATTGTCTTGCACTCAGTTACAGTGATTTGTCGGTATGGTGTTTCTCGTGTGATGCTTATTTAGATGCTCAAGTGATTCCGCTACTACAGCCAGTCTATGAAACTGCCTATATTATGAAATTTGGTGAGGCCCCGCCTTTGCGCTTGGTTTGA 450 43.56 MANDGASSSNPQVLNLQLNSIKEEDDDFLSGGESGWVEARTSCDHLALLSSDLSHIPPHNTSCNICENPCENWLCLCCENVFCSRFVNKHMLQHYQTTNHCLALSYSDLSVWCFSCDAYLDAQVIPLLQPVYETAYIMKFGEAPPLRLV 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29020821 29024526 - Conep03aG0152100.1 Cone3ag1022 434481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1022 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 144 IPR013083 -
Cone3ag1022 149 SMART Zf_UBP_1 62 111 IPR001607 GO:0008270(InterPro)
Cone3ag1022 149 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 1 149 - -
Cone3ag1022 149 SUPERFAMILY RING/U-box 41 126 - -
Cone3ag1022 149 ProSiteProfiles Zinc finger UBP-type profile. 41 141 IPR001607 GO:0008270(InterPro)
Cone3ag1022 149 Pfam Zn-finger in ubiquitin-hydrolases and other protein 63 122 IPR001607 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1022 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1038 Cone-Chr10:7227483 Cone3ag1022 Cone-Chr3:29020821 1.58E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g688 . . . . . . Bma05g00656 . . . . . . . . . . . . . . . . . Cla10g01002 Cam10g1025 Cec10g1056 Cco10g1020 Clacu10g1042 Cmu10g1826 Cre10g1199 . . Cone3ag1022 . . . . . . . . . . . . . Sed13g0450 Cmo04g00487 . . . . . . Cpe01g00407 Bhi11g01143 Tan01g0644 Cmetu07g0339 . Hepe07g0422 Mch10g0452 . . . . . . . . . . . Cme07g02174
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011357 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29