Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1024 ATGGTGGCTGCTATTTCAGGAGCAGCTTCGACCAATCAACAGCACAATTCAAACCTCAACAAAACCACCTCCGACGAAGAACCGGCTGGTGCGACCCATCTTCTTCTTCAAAATCCATCGAGACCTCCTCTTCTACCTTCGGAAAAAGACAATGGCCTCCTTCTCAAGAAGCAACGACCCAGAAGAGGGCTACAGGTTTCTTCAAGGTACATGCCTCCATCTCCTTCAACTTCTACTTCTTCCACAACCACCACCACCACAACGACGTCATCTTCTTCCTCTTCACGACGATGCCCATCTCCCTTACTCTCTCGCTCCACGAATTCCACATGCCCATCTACCCCATTTCCCTCTATTGGACCCAAACGGTCACAATCTGTTGACCGAAGGAGACCAAGCACTACTCCCCGGCGTATGACTCCGGTCCCGGAATCTAAACAAGGAAATGCCCTAGAGATTTCAACCGCTACAAAGCTCTTAATCACTTCAACTAGAAGCTTGTCGGTTTCTTTCCAAGGGGAATCTTTCTCCCTTCCGATTAGTAAGACTAAAGAAACTTCTACCCCGAGTTTAAGCAATGGAAGAAAGGCCACACCGGAGCGTCGGAGGTCCACTCCGGTGAGAGGTAGTGGTGGTGGAGATCAGGTGGAAAATTCCAAGCCTATTGATCAGCATCGATGGCCAGCAAGAACCCGACAAGTAAATTCTAGTTTGAACACATTATCAAGGAGTTTAGATTGTAGTGTTGTTGATAGAAACAAGCTCCATGGGATAAACGGATCTGGAATGGTAATTGATGAGAGATCAAGCTCGGATTTAGGAAACAACCCAGATGCCAATTCTTCTGATCTTACTGCTTCTGATACGGATAGTGTTTCATCCGGAAGCAATTCTGGCCTACAAGATTGTGGTGGCATTTCTGTAAATAATCAGAGCAAACAACCTCGAGGAATTGTTGTTTCGGCGAGGTTTTGGCAAGAAACCAACAGCCGAATGAGGAGGTTACAAGATCCAGGATCCCCTTTATCGACCAGTCCCAGGTCAAGAGTACCCACCCAATCAAAGTTCATTCAATCCAAAAGGCTTTCAACTGATAGCCCACTATCATCTCCAAGAACTACGGCTTTGCCTAATCGGGCTGCCACTAGGCCCGCTTCACCTAGTAAGCTTTGGAGTTCATCTCCATCCAGAGGGGTGGCGAGTCCTTCTCGTGTGAGAGTTTCGGGTAATGGGTCATTGCTTGGTAATTGTGGTACTAATGGTAGTACTAGTAGTACGCCTTCTATTTTGAGTTTTTCAGTTGATATTAGAAGAGGGAAAGTTGGGGAAGATCGCATTATTGATGCACACATGTTGAGGCTTCTGCATAACCGGTATTTGCAGTGGCGGTTTGTAAATGCCAGGTCAGATGCTACCTTCATGGTGCAGAGACTCAATGCCGAGAAAAATCTGTGGAATGCATGGGTCACAATCTCAGAACTACGGCATTCTGTCACGCTTAAAAGAATCAAGTTTCTATTGCTGAGGCGAAAGTTGAAGCTAGCATCCATCCTCAGGGAACAAATGAGGTATTTGGAAGAATGGACGGTTCTGGACAGCAATCACTCTAACTCTTTGCTTGAAGCAACTGAAGCCTTAAAGGCCAGTACTCTGCGTCTTCCGGTTGTGGGAAAAGCAACGGCTGATATTCAAAATCTTAAGGATGCTGTTGGGTCGGCAGTTGATGTTATGCAAGCAATGGGATCCTCAATATGCTCTCTTTCATTAAAGGTGGAAGAAATGATCTCCATTGTGGCCGAACTAGTGAAGGTGATGGCAAATGAACGGCATTTGCTTGGACAATGCACGGACTTTCTATCCATTTTAGCATCCATGCAGGTCAGGGATTGCAGCTTGAAAACGCATGTGATACAACTGCATCGTTTTCCGACCAATAGTGGCTTGACAGCTCATCCGTATAACTGA 1965 46.26 MVAAISGAASTNQQHNSNLNKTTSDEEPAGATHLLLQNPSRPPLLPSEKDNGLLLKKQRPRRGLQVSSRYMPPSPSTSTSSTTTTTTTTSSSSSSRRCPSPLLSRSTNSTCPSTPFPSIGPKRSQSVDRRRPSTTPRRMTPVPESKQGNALEISTATKLLITSTRSLSVSFQGESFSLPISKTKETSTPSLSNGRKATPERRRSTPVRGSGGGDQVENSKPIDQHRWPARTRQVNSSLNTLSRSLDCSVVDRNKLHGINGSGMVIDERSSSDLGNNPDANSSDLTASDTDSVSSGSNSGLQDCGGISVNNQSKQPRGIVVSARFWQETNSRMRRLQDPGSPLSTSPRSRVPTQSKFIQSKRLSTDSPLSSPRTTALPNRAATRPASPSKLWSSSPSRGVASPSRVRVSGNGSLLGNCGTNGSTSSTPSILSFSVDIRRGKVGEDRIIDAHMLRLLHNRYLQWRFVNARSDATFMVQRLNAEKNLWNAWVTISELRHSVTLKRIKFLLLRRKLKLASILREQMRYLEEWTVLDSNHSNSLLEATEALKASTLRLPVVGKATADIQNLKDAVGSAVDVMQAMGSSICSLSLKVEEMISIVAELVKVMANERHLLGQCTDFLSILASMQVRDCSLKTHVIQLHRFPTNSGLTAHPYN 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29034875 29039947 + Conep03aG0152300.1 Cone3ag1024 434483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1024 654 Pfam QWRF family 292 612 IPR007573 -
Cone3ag1024 654 MobiDBLite consensus disorder prediction 256 314 - -
Cone3ag1024 654 MobiDBLite consensus disorder prediction 69 121 - -
Cone3ag1024 654 MobiDBLite consensus disorder prediction 1 27 - -
Cone3ag1024 654 MobiDBLite consensus disorder prediction 331 405 - -
Cone3ag1024 654 MobiDBLite consensus disorder prediction 180 195 - -
Cone3ag1024 654 MobiDBLite consensus disorder prediction 1 151 - -
Cone3ag1024 654 MobiDBLite consensus disorder prediction 264 314 - -
Cone3ag1024 654 PANTHER AUGMIN FAMILY MEMBER 40 644 - GO:0005737(PANTHER)|GO:0005813(PANTHER)|GO:0005880(PANTHER)|GO:0007098(PANTHER)|GO:0008017(PANTHER)|GO:0051225(PANTHER)
Cone3ag1024 654 MobiDBLite consensus disorder prediction 180 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1024 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1319 Cone-Chr10:10305496 Cone3ag1024 Cone-Chr3:29034875 1.37E-24 dispersed
Cone16ag0403 Cone-Chr16:6434024 Cone3ag1024 Cone-Chr3:29034875 3.54E-73 dispersed
Cone2ag0589 Cone-Chr2:3435616 Cone3ag1024 Cone-Chr3:29034875 4.93E-65 dispersed
Cone3ag1024 Cone-Chr3:29034875 Cone4ag0583 Cone-Chr4:2685896 8.13E-61 dispersed
Cone10ag1039 Cone-Chr10:7235475 Cone3ag1024 Cone-Chr3:29034875 0 wgd
Cone17ag0882 Cone-Chr17:6977182 Cone3ag1024 Cone-Chr3:29034875 1.32E-123 wgd
Cone20ag0228 Cone-Chr20:980446 Cone3ag1024 Cone-Chr3:29034875 3.38E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g691 Blo02g00934 Blo03g00075 Bda06g01204 . Bpe07g00273 . Bma05g00655 . Cmo19g00571 Cmo11g01414 . . . . . Cpe04g00322 Cpe15g00445 . . . . . . . Cla02g00676 Cam02g0709 Cec02g0721 Cco02g0742 Clacu02g0716 Cmu02g0713 Cre02g1027 . . Cone3ag1024 Cone10ag1039 Lsi03g00569 Csa07g00691 . Cme01g00114 . . . . . Bpe05g00476 . . . . . Cma11g01704 Cma19g00558 Car11g01138 Car19g00416 . . . . . . . . . . . . . . . . . . Chy01g00125 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005063 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 2 41