Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1025 ATGAAGTTTATGAAACTCGGATCAAAGCCAGATTCGTTTCAGACCAATGGGAACATTGTTAGGTATGCAGCGAGTGAGCTGACTACAGACCTAATCATTATTGTAGGCGATATCAAATTTTATCTTCATAAGTTTCCTCTTCTTTCAAAGAGTGCTCTCTTGCAGAGGCTGGTCACAAATGTAGAGGAGAACAGTAACGAGGTTCAAATTTCCAATATTCCCGGTGGGCATGCTGCTTTTGAGATATGTGCTAAATTCTGTTACGGAATGACAGTTACTCTCAATGCCTATAATGTCGCAGCAGCCCGAAGTGCAGCTGAATATCTAGAAATGCAAGAGATGATCGAGAAAGGAAACCTCATTTACAAGATTGATGTCTTCCTTAGTTCAAGCATATTCTGTAGCTGGAAAGACTCCATAATTGTTCTTCAGACCACGAAATCACTACACCCATTCTCTGAAGAATTGAAATTAGTTGGAAACTGTATCAACTCTATTGCTGCAAAAGCATGTGTTGATGTTTCCAAAGTCGACTGGTCTTATACGTATAACTGTAAGAAGCTTCCAGAAGAAAATAATAATGATCTGCAATGGAATTGTGTTAGAAACCATGCAGTCCCACGAGATTGGTGGGTTGAGGATTTATGTGAGCTCGAATTCGATTTATACAAGCGGGTTTTGGTTAATATAAGAAACCGAGAGATAATTTCTAATGAAGTGATAGGAGAAGCCTTGAAAGCTTATGCTTATAGACGACTTCCGGGTTTTAGCAAGGGTGTGATTCAACATGAAGATATTGTAAAGCACCAAGTAACAGCTGAATCAATTGTGGAGCTTTTGCCATGTGAGAAAGGGAGTGTTTCTTGTGGCTGTTTGTTCAAGTTATTGAAAGCAATTATTTATCTAAACTCGGGCGATGCGGTTAAGCAAGAGCTGATAAGGAGGATTGGACAACAATTAGAGTCTGCTTCGGTTAATGATCTTTTAATTAGAGGACCGGAAGGGGAAGCAACAATGTATGATGTGACCACGGTGCAGAAAATTGTACAAAAATTTCTATTGCAAGATAAGAGTGGAAGTGGGGTCGAATTGTTTGAAGAAGGTGGTGATGAGATTAAGGAGACAAGGAAGCTCGGGATTTTATCGGAAGCATCTAAGCTTATGGTGGGAAAATTGATAGATGGGTACTTGGCTGAAATTGCGAAGGATCATAACCTGCCTTTGTCAAAGTTTGTTGAGCTTGCTGAAATGGTTTCTTCTATCCGTAGGCCTGTTCATGATGGGATTTATCGAGCGATCGACATCTATCTTAAGGAGCACCCGCGAATAAGCAAGAGCGAGAGAAAGAGGATATGCAAATTGATGGACTGCAAGAAACTCTCTGGTGATGCATGCATGCACGCTGTTCAAAACGAGAGACTCCCTCTCCGTGTTGTGGTTCAAGTACTCTTTTTCGAGCAAGTCAGGCTGTCCAACAAATCCGGGAGCAGCACTCCAGACCTACCAAAAGCCATCAATTACCAACTACACAGCGGGTCCCATGGGAGCTCGAGATCGGCCACGACCAACACAGAGGAAGACTGGGATGCGGTTGCCATGGCTGAAGAGCTCAAGGCCCTCAGGGGAGAACTGGCCTCCTTAAGGTTCCAAAATGGTTCCGGAGGAGGAGGGAGTGAGAGGAATGGTGAGGGAAAAAATGGTTAA 1704 42.66 MKFMKLGSKPDSFQTNGNIVRYAASELTTDLIIIVGDIKFYLHKFPLLSKSALLQRLVTNVEENSNEVQISNIPGGHAAFEICAKFCYGMTVTLNAYNVAAARSAAEYLEMQEMIEKGNLIYKIDVFLSSSIFCSWKDSIIVLQTTKSLHPFSEELKLVGNCINSIAAKACVDVSKVDWSYTYNCKKLPEENNNDLQWNCVRNHAVPRDWWVEDLCELEFDLYKRVLVNIRNREIISNEVIGEALKAYAYRRLPGFSKGVIQHEDIVKHQVTAESIVELLPCEKGSVSCGCLFKLLKAIIYLNSGDAVKQELIRRIGQQLESASVNDLLIRGPEGEATMYDVTTVQKIVQKFLLQDKSGSGVELFEEGGDEIKETRKLGILSEASKLMVGKLIDGYLAEIAKDHNLPLSKFVELAEMVSSIRRPVHDGIYRAIDIYLKEHPRISKSERKRICKLMDCKKLSGDACMHAVQNERLPLRVVVQVLFFEQVRLSNKSGSSTPDLPKAINYQLHSGSHGSSRSATTNTEEDWDAVAMAEELKALRGELASLRFQNGSGGGGSERNGEGKNG 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29040245 29045685 - Conep03aG0152400.1 Cone3ag1025 434484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1025 567 SUPERFAMILY POZ domain 21 116 IPR011333 -
Cone3ag1025 567 MobiDBLite consensus disorder prediction 548 567 - -
Cone3ag1025 567 ProSiteProfiles BTB domain profile. 29 96 IPR000210 GO:0005515(InterPro)
Cone3ag1025 567 PANTHER OS12G0117600 PROTEIN 26 538 IPR043454 -
Cone3ag1025 567 Pfam BTB/POZ domain 25 117 IPR000210 GO:0005515(InterPro)
Cone3ag1025 567 Gene3D Potassium Channel Kv1.1; Chain A 15 119 IPR011333 -
Cone3ag1025 567 ProSiteProfiles NPH3 domain profile. 209 489 IPR027356 -
Cone3ag1025 567 MobiDBLite consensus disorder prediction 492 526 - -
Cone3ag1025 567 Pfam NPH3 family 209 465 IPR027356 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1025 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1025 Cone-Chr3:29040245 Cone7ag1664 Cone-Chr7:11172833 2.12E-166 dispersed
Cone10ag1040 Cone-Chr10:7240981 Cone3ag1025 Cone-Chr3:29040245 0 wgd
Cone3ag1025 Cone-Chr3:29040245 Cone6ag1453 Cone-Chr6:11623455 6.74E-237 wgd
Cone3ag1025 Cone-Chr3:29040245 Cone9ag1374 Cone-Chr9:10287086 2.52E-239 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79