Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1033 ATGGGTGCTCCAAAGCAGAAATGGACAGCAGAAGAAGAAGCAGCCCTCAAAGCTGGTGTCGTTAAGCATGGGCCAGGAAAATGGCGAACAATACTTAAAGATCCTGAATACAGTAGTGTCTTATACCTCCGTTCCAATGTAGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGGTGGGGCTCCAGAGAGAAAGCTAGGTTAGCACTTAAGAGGGTACATGTCCCTAAACAAGACGACAATGCTTTGCCTATTGTTAATACAGTCCAAAGTGATGAAGAACTAGTGGATGCTAAGCCACTTGCTGTCTCTGGCGAGCCTCAGATTTCTGCTCCAAAGAGATCTATTGTAAGGCTGGACAGTATAATTATGGAGACAATTACTACGTTGAAGGAGCATGGCGGTTCTAATAAAACGGCTATTGCTTCATATATAGAGGAACAATATCGTGCACCTCCAGACTTCAAGAGGTTGCTGTCAGCAAAACTGAAATTTTTGACAGCTAATGGGAAACTCATTAAGGTTAAACGCAAATACAGAATCCCACCATCTCAACCAATTTCAGAGAAAAGAAGCTCCTCCCTGCTATTGTTAGAGGGAAGCCAGAAAGTTGCACCAAGAACTGAAAAGGCTGAGTTGGTTACTCATACAAAAGCTCAGATCGATCTGGACTTGGCCAAGATGAGAACAATGAATGCCCAAGAAGCTGCTTTAGCTGCTGCAAAAGCAGTTTCTGAAGCAGAAGCAGCTTTGGCAGAAGCTGAAGAGGCGGCAAGGGAAGCGGAGGAAGCTGAAGCTGATGCAGAAGCTGCACAGGCTTTTGCGGAAGCAGCAATGAAGACCCTCAAGGGAATAAATAACACCTCGAAAATGATGATCCGAGTTTGA 897 44.59 MGAPKQKWTAEEEAALKAGVVKHGPGKWRTILKDPEYSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRVHVPKQDDNALPIVNTVQSDEELVDAKPLAVSGEPQISAPKRSIVRLDSIIMETITTLKEHGGSNKTAIASYIEEQYRAPPDFKRLLSAKLKFLTANGKLIKVKRKYRIPPSQPISEKRSSSLLLLEGSQKVAPRTEKAELVTHTKAQIDLDLAKMRTMNAQEAALAAAKAVSEAEAALAEAEEAAREAEEAEADAEAAQAFAEAAMKTLKGINNTSKMMIRV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29123410 29126200 + Conep03aG0153400.1 Cone3ag1033 434492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1033 298 Gene3D - 8 92 - -
Cone3ag1033 298 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cone3ag1033 298 FunFam Telomere repeat-binding factor 1 2 58 - -
Cone3ag1033 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone3ag1033 298 FunFam Telomere repeat-binding factor 1 116 196 - -
Cone3ag1033 298 SUPERFAMILY Winged helix DNA-binding domain 115 194 IPR036390 -
Cone3ag1033 298 CDD SANT_TRF 6 56 - -
Cone3ag1033 298 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone3ag1033 298 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Cone3ag1033 298 SMART sant 4 59 IPR001005 -
Cone3ag1033 298 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cone3ag1033 298 Pfam linker histone H1 and H5 family 123 179 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone3ag1033 298 Coils Coil 240 277 - -
Cone3ag1033 298 Gene3D - 116 197 IPR036388 -
Cone3ag1033 298 PANTHER SINGLE MYB HISTONE 4 1 286 IPR044597 GO:0003691(InterPro)
Cone3ag1033 298 FunFam Telomere repeat-binding factor 1 8 85 - -
Cone3ag1033 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0173 Cone-Chr12:863163 Cone3ag1033 Cone-Chr3:29123410 8.97E-82 dispersed
Cone3ag1033 Cone-Chr3:29123410 Cone8ag0167 Cone-Chr8:853030 4.42E-79 dispersed
Cone12ag1042 Cone-Chr12:8696262 Cone3ag1033 Cone-Chr3:29123410 1.60E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45835 PF00305 Lipoxygenase 2.70E-07 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1033 K09422 - cit:102629981 352.829