Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1033 ATGGGTGCTCCAAAGCAGAAATGGACAGCAGAAGAAGAAGCAGCCCTCAAAGCTGGTGTCGTTAAGCATGGGCCAGGAAAATGGCGAACAATACTTAAAGATCCTGAATACAGTAGTGTCTTATACCTCCGTTCCAATGTAGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGGTGGGGCTCCAGAGAGAAAGCTAGGTTAGCACTTAAGAGGGTACATGTCCCTAAACAAGACGACAATGCTTTGCCTATTGTTAATACAGTCCAAAGTGATGAAGAACTAGTGGATGCTAAGCCACTTGCTGTCTCTGGCGAGCCTCAGATTTCTGCTCCAAAGAGATCTATTGTAAGGCTGGACAGTATAATTATGGAGACAATTACTACGTTGAAGGAGCATGGCGGTTCTAATAAAACGGCTATTGCTTCATATATAGAGGAACAATATCGTGCACCTCCAGACTTCAAGAGGTTGCTGTCAGCAAAACTGAAATTTTTGACAGCTAATGGGAAACTCATTAAGGTTAAACGCAAATACAGAATCCCACCATCTCAACCAATTTCAGAGAAAAGAAGCTCCTCCCTGCTATTGTTAGAGGGAAGCCAGAAAGTTGCACCAAGAACTGAAAAGGCTGAGTTGGTTACTCATACAAAAGCTCAGATCGATCTGGACTTGGCCAAGATGAGAACAATGAATGCCCAAGAAGCTGCTTTAGCTGCTGCAAAAGCAGTTTCTGAAGCAGAAGCAGCTTTGGCAGAAGCTGAAGAGGCGGCAAGGGAAGCGGAGGAAGCTGAAGCTGATGCAGAAGCTGCACAGGCTTTTGCGGAAGCAGCAATGAAGACCCTCAAGGGAATAAATAACACCTCGAAAATGATGATCCGAGTTTGA 897 44.59 MGAPKQKWTAEEEAALKAGVVKHGPGKWRTILKDPEYSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRVHVPKQDDNALPIVNTVQSDEELVDAKPLAVSGEPQISAPKRSIVRLDSIIMETITTLKEHGGSNKTAIASYIEEQYRAPPDFKRLLSAKLKFLTANGKLIKVKRKYRIPPSQPISEKRSSSLLLLEGSQKVAPRTEKAELVTHTKAQIDLDLAKMRTMNAQEAALAAAKAVSEAEAALAEAEEAAREAEEAEADAEAAQAFAEAAMKTLKGINNTSKMMIRV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29123410 29126200 + Conep03aG0153400.1 Cone3ag1033 434492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1033 298 Gene3D - 8 92 - -
Cone3ag1033 298 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cone3ag1033 298 FunFam Telomere repeat-binding factor 1 2 58 - -
Cone3ag1033 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone3ag1033 298 FunFam Telomere repeat-binding factor 1 116 196 - -
Cone3ag1033 298 SUPERFAMILY Winged helix DNA-binding domain 115 194 IPR036390 -
Cone3ag1033 298 CDD SANT_TRF 6 56 - -
Cone3ag1033 298 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone3ag1033 298 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Cone3ag1033 298 SMART sant 4 59 IPR001005 -
Cone3ag1033 298 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cone3ag1033 298 Pfam linker histone H1 and H5 family 123 179 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone3ag1033 298 Coils Coil 240 277 - -
Cone3ag1033 298 Gene3D - 116 197 IPR036388 -
Cone3ag1033 298 PANTHER SINGLE MYB HISTONE 4 1 286 IPR044597 GO:0003691(InterPro)
Cone3ag1033 298 FunFam Telomere repeat-binding factor 1 8 85 - -
Cone3ag1033 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1033 K09422 - - cit:102629981 352.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0173 Cone-Chr12:863163 Cone3ag1033 Cone-Chr3:29123410 8.97E-82 dispersed
Cone3ag1033 Cone-Chr3:29123410 Cone8ag0167 Cone-Chr8:853030 4.42E-79 dispersed
Cone12ag1042 Cone-Chr12:8696262 Cone3ag1033 Cone-Chr3:29123410 1.60E-83 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag1033 . 1 297 Single Myb Histone (SMH) Gene Family AT1G49950 68.0 2.8e-85 312.8
Cone12ag1042 . 1 287 Single Myb Histone (SMH) Gene Family AT1G49950 56.4 2.1e-64 243.4
Cone8ag0167 . 1 248 Single Myb Histone (SMH) Gene Family AT1G49950 52.6 8.1e-61 231.5
Cone12ag0173 . 1 249 Single Myb Histone (SMH) Gene Family AT1G49950 51.0 9.9e-59 224.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45835 PF00305 Lipoxygenase 2.70E-07 No_clan Cone TF