Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1037 ATGACCAAGAAACCCATCGCCACCCTCACCCAGCGATTCCGTTACCCCACCGTCGTCAATCCCGCCGCTATCTCTAAGTTGACCGCTCGTCCCTCTCTCAATGTCTCTCTCTCCAAACCCACAGCTCCTTCTAGCTTGCTATGCTACGAAGAATCCGACGACAATGCCGACGCGTCGATCTACGTACAGTCCTTGCTTCCATCTCCACCGTCCGATGAGGATTCCACCATATCCAGACTCATCGTTTCCGAGTCTGATCACATGCCCCATACAGATTATCTACGACGCTCCCTTGACCGTTCGATCGACATCACCGCTCGCCAGGACTCCATCAACTGGATCTTGAAGGTGCACTCGTATTATAATTTCCAAGCAGTCACTGCTCTCCTCTCAGTCAACTACCTTGACCGCTTTCTCTCCACCGATCCCCTGCCGGAAAAAAGATGGCCGTTTCAGCTTCTAGCAGTGGCGTGCTTGTCATTAGCGGCGAAAATGGAGGAGGATCAGATCCCACTGCTCTTAGATCTCCAAATTTTCGAACCGGAATTTGTGTTCGAGTCCAAAACGGTGCAGAGAATGGAGGTTTTGGTCATGGAAAAGCTCGATTGGAGACTGCGATCTATTACACCGTTCGATTTTCTCAACGATTTCATCTCTAAGCTTTTGTCTTCTTCCGCTATTAACGACCTTTCTCCGATTTTCCAAGCTTCCTCCGATCTCATTCTCAGCACCACTCGTGCCGTCGATTTCTTGGTTTTTTCGCCGTCGACTGTGGCGGCGGCCGCCGTCCTCTGTGCAGCGGGGGAGAATCTAGATGCTCCAGTAACGTTTCATGAGAGATTGAACGGAGAAATGGTGAGAAGCTGTCAACAACTAATGGAGGAGTATGTAATAGACACGTGTCCAGGTATACTCCTGAATGAGCGGAGAGCTGATCAGCCAGCTCCGCTTCCTAGTCCAGTTGGTGTCCTTGACGCCGCTGCTGCATGCGTCAGCTGTTATACGGGGTCCGATAATCCCAACTCTAGCCGTCAAGCCGAGCCGTGGTCCAAACGGCTTCGATCCTCTGCGCCGGATGTACAGCAGCGATAG 1092 51.74 MTKKPIATLTQRFRYPTVVNPAAISKLTARPSLNVSLSKPTAPSSLLCYEESDDNADASIYVQSLLPSPPSDEDSTISRLIVSESDHMPHTDYLRRSLDRSIDITARQDSINWILKVHSYYNFQAVTALLSVNYLDRFLSTDPLPEKRWPFQLLAVACLSLAAKMEEDQIPLLLDLQIFEPEFVFESKTVQRMEVLVMEKLDWRLRSITPFDFLNDFISKLLSSSAINDLSPIFQASSDLILSTTRAVDFLVFSPSTVAAAAVLCAAGENLDAPVTFHERLNGEMVRSCQQLMEEYVIDTCPGILLNERRADQPAPLPSPVGVLDAAAACVSCYTGSDNPNSSRQAEPWSKRLRSSAPDVQQR 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29188468 29190084 + Conep03aG0153800.1 Cone3ag1037 434496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1037 363 MobiDBLite consensus disorder prediction 336 363 - -
Cone3ag1037 363 SUPERFAMILY Cyclin-like 73 205 IPR036915 -
Cone3ag1037 363 CDD CYCLIN_AtCycD-like_rpt1 106 203 - -
Cone3ag1037 363 Gene3D - 79 272 - -
Cone3ag1037 363 Pfam Cyclin, C-terminal domain 208 297 IPR004367 -
Cone3ag1037 363 ProSitePatterns Cyclins signature. 107 138 IPR048258 -
Cone3ag1037 363 SMART Cyclin_C_2 208 334 IPR004367 -
Cone3ag1037 363 SMART cyclin_7 112 199 IPR013763 -
Cone3ag1037 363 FunFam D6-type cyclin 90 206 - -
Cone3ag1037 363 Gene3D - 90 206 - -
Cone3ag1037 363 PANTHER CYCLINS 73 278 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone3ag1037 363 Pfam Cyclin, N-terminal domain 79 206 IPR006671 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1037 K18810 - - cit:102627980 352.443
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0627 Cone-Chr12:5632982 Cone3ag1037 Cone-Chr3:29188468 3.99E-59 dispersed
Cone13ag1015 Cone-Chr13:8489773 Cone3ag1037 Cone-Chr3:29188468 5.93E-59 dispersed
Cone19ag1009 Cone-Chr19:7532746 Cone3ag1037 Cone-Chr3:29188468 2.19E-58 dispersed
Cone20ag0545 Cone-Chr20:3036345 Cone3ag1037 Cone-Chr3:29188468 3.71E-47 dispersed
Cone3ag1037 Cone-Chr3:29188468 Cone4ag1308 Cone-Chr4:10767744 2.72E-51 dispersed
Cone10ag1053 Cone-Chr10:7320857 Cone3ag1037 Cone-Chr3:29188468 8.34E-137 wgd
Cone3ag1037 Cone-Chr3:29188468 Cone9ag1376 Cone-Chr9:10309420 5.41E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g725 Blo02g00926 Blo03g00066 . . Bpe07g00284 . Bma05g00646 . . . . . . . . . . . . . . . . . Cla10g00969 Cam10g0993 Cec10g1023 Cco10g0985 Clacu10g1013 Cmu10g1798 Cre10g1170 . . Cone3ag1037 Cone10ag1053 . . . . . . . . . Bpe05g00467 . . Sed06g1605 Cmo04g00470 Cmo16g00330 . . . . Cpe14g00259 Cpe01g00393 Bhi11g01121 Tan01g0618 Cmetu10g0407 . Hepe07g0403 Mch10g0416 . . . . . . . . Lsi03g01011 . . Cme07g02202
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004759 1 1 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40