Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1045 ATGGCAACAATGAAACTTCGACTGCGATCTCTCGAATCCAGAGAAACCCTAAGGATCACAGTCCCTGATCCATGTACTCTCCAGGACCTCAAAGACGCTCTCCTTCAATCGCTCACATCAACTTCTTCTCCTCCGCGTCTTTCTCTGAACCGGAAGGACGAGCTGCATGCTTCTTCGCCGGAAGATTCTCTCCGGTTTCTAGAAATTGAAGGTCGGGAAACCTTGTTTCACACGAGCGATCTCCATTTCGAGAAACCGAAATTGGAGAATTCTGAGGTTATTGAAGAATCTCAAATTCCAGGTTCGGAAAGAGTTATTGAAGAGGATGAAGCTAATCTAGCTTCCAATCCTGAGAGACAAGGACCTGAACGATTCGCTGAAGTTGAAAGTATGGATGTTGATGATCAATCTGCTGCTGTAATGGAGAAGAAGGATCTTTATGTACCTTTGTTCATGAAGAGAGTGCTAAGAGAGGAGTTAGGAAACGATCGTAATGCTTACACACTGCTAGTAATTGCAGTCCATGCTGTTCTTCTCGAATCCGGATTCATCACGATCGATTCAGTTTCAGGTAAAGAGTGCAATCGATTTCATATCCCGAACGAGTGGCCCTCGTCATCGTTTACAATGTCTCTTTTTTATACTCTGCCTGAAATATTGTCAAATAGTTCTACTACCCAAACAATTTTGGTCAAGTTCCAGAGTTTAGGGCATTTCATCAATGTTTATGGCTCTCTTGTTAATAACAATAACAATAGTAACAATAGTTCAGTTTTGCATAAGGTTTGTTTGAGTAAAAATGAATATGCGCCCACCCTTGATGTGGTATGGGCTAGCTCTGGTTCTGATAATAGAACTGCAGTAGATGATGATAATGTATCGTCTGAAAAGCAACTTTTTTCATTATGGAAAACTGTGAAAGATGAGCTTGCATTGCCTCTCTTGACCAACCTTTGCGAAAGTGCTGGTTTACCTTCTCCAGCATGCTTCATGCTGCTTCCGGCTGATATAAAGATGAAGATTCTTGAATTACTCCATGCAGTGGATATAGCGAGGGTAGGATGTGTTTGCATGGAAATGCGTTACTTGTGTTACAATAGTGATTTGTGGAATATGAAGTGTGTTGAAGAGTTTGGGATGAAAAGGGTAAAAGGAGAGGAGACGAGGTGGAGGGAGAGGTTTGCTTGGTTTTGGGAGCAGAAGAAGGATCTAGAACAGGACATTGTTGCTTCGCGGAGAAGTTATCAGAATCGTGGCGAAATGCCGTTTTTCTACCCTATGAGACCTTCTATTAGAAATACTTTTCCTTATGGGGCACATCCGAGGATTGTAGGTGGAGATTATGATATCCTGCCGGGTATGGGCGTCCCGCCTCGGATCGGACAGTATCGGAGAAATTCCAGAGGTCGAGCCAGGGGTTTTCAGCCCTTTAGGTAA 1437 43.15 MATMKLRLRSLESRETLRITVPDPCTLQDLKDALLQSLTSTSSPPRLSLNRKDELHASSPEDSLRFLEIEGRETLFHTSDLHFEKPKLENSEVIEESQIPGSERVIEEDEANLASNPERQGPERFAEVESMDVDDQSAAVMEKKDLYVPLFMKRVLREELGNDRNAYTLLVIAVHAVLLESGFITIDSVSGKECNRFHIPNEWPSSSFTMSLFYTLPEILSNSSTTQTILVKFQSLGHFINVYGSLVNNNNNSNNSSVLHKVCLSKNEYAPTLDVVWASSGSDNRTAVDDDNVSSEKQLFSLWKTVKDELALPLLTNLCESAGLPSPACFMLLPADIKMKILELLHAVDIARVGCVCMEMRYLCYNSDLWNMKCVEEFGMKRVKGEETRWRERFAWFWEQKKDLEQDIVASRRSYQNRGEMPFFYPMRPSIRNTFPYGAHPRIVGGDYDILPGMGVPPRIGQYRRNSRGRARGFQPFR 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29237063 29238985 + Conep03aG0154600.1 Cone3ag1045 434504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1045 478 ProSiteProfiles F-box domain profile. 327 373 IPR001810 GO:0005515(InterPro)
Cone3ag1045 478 Gene3D - 330 407 - -
Cone3ag1045 478 Gene3D - 146 329 - -
Cone3ag1045 478 MobiDBLite consensus disorder prediction 459 478 - -
Cone3ag1045 478 SUPERFAMILY F-box domain 324 395 IPR036047 GO:0005515(InterPro)
Cone3ag1045 478 PANTHER F-BOX PROTEIN SKIP22 4 470 - -
Cone3ag1045 478 CDD F-box_AtSKIP22-like 329 374 - -
Cone3ag1045 478 Pfam F-box-like 332 374 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1045 K10293 - - csv:101220545 342.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1061 Cone-Chr10:7388600 Cone3ag1045 Cone-Chr3:29237063 1.41E-282 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g767 Blo02g00918 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00962 Cam10g0985 Cec10g1016 . Clacu10g1007 Cmu10g1790 Cre10g1163 . . Cone3ag1045 Cone10ag1061 . . . . . . . . . . . . Sed07g1148 Cmo04g00463 Cmo16g00325 . . . . Cpe14g00254 . Bhi11g01103 Tan01g0606 Cmetu07g0362 . . Mch10g0409 . . . . . . . . Lsi03g01007 . . Cme07g02210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009275 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34