Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1050 ATGGCTCTACTCCTGAGAGCTTTCCCTCTCACATCGGTCCGCTCGAATACTCACAAATTTCCCCTTCACCACCTCACTTTTCTCAAACCCCACTTCCCAAAATCGCTTCTCAGAACCCCAAAAGCAGCTTTCTCCGTTACTGCTTTAACACAACCCTCTTCTTCTTCTTCCTCCACTGAAACTCTCACTCCGAACTCTAACCCAGCAGCGCCACATCCGTTCAGCGACTCTCTTAAATGGGTTAGCCGAACCGGGTTCTGCGGCGAATTGTCAAGTGATGACGTGGGTAAACGGGTCCAGCTCTGTGGCTGGGTCGCTCTTCATAGGGTCCATGGTGGCCTCACCTTTCTCAATCTAAGAGACCATACCGGCATTGTTCAGGTTGCTACGCTGCCGGACAAATTCCCAGATGCCCACTCAACCATTAAGGACTTGAGGCTCGAGTACGTGGTTGCTGTGGAAGGCATTATACGGTCTAGGCCGGAAGATTCCATTAATAAGAAAATGAAAACTGGCACTATTGAGCTTGCTGCAGAGCATGCTGAAGTATTGAATGCCGTGAAATCAAAGTTGCCATTTTTAGTTACCACTGTGGATGAGGCAAAAGATTCTGTTAAAGAGGAGATTCGTTTGAGATATCGATGCCTTGATCTAAGGAGGCAGCAAATGAGTTTTAACATAATGTTGAGGCATAAAGTGGTGAAGCTCATTCGAAGATATTTAGAGGACATACATGGATTTGTGGAGATTGAAACCCCAATACTTTCTAGATCTACCCCGGAAGGTGCTCGAGATTATCTGGTGCCCTCCAGAGTTCAGCCAGGAACATTCTACGCTTTGCCTCAAAGTCCACAACTTTTTAAGCAAATGTTAATGGTCTCTGGTTTTGATAAATATTACCAAGTAGCAAGGTGTTTTAGAGATGAGGACCTAAGGGCAGATAGACAACCGGAGTTCACACAGCTTGATATGGAATTGTCATTTACTACGTTGGAGGACATGCTGAGCCTTAATGAAGATTTAATTAGAAAGGTTTTTCTGGAAATCAAAGGTGTCCAATTACCTAATCCTTTTCCAAGGCTTTCCTATTCTGAAGCAATGAGTCGGTATGGTTCAGACAGACCAGACACAAGATTCGATCTGGAGTTGCAAGATGTATCTGATATATTTGCAGATTCCTCCTTCAGGGTTTTTGCAGATACATTGAAAAGCAGAGGTGTTATCAAAGTGATCTGTGTTCCGTCTGGTGCTAAAAGGTATTCAAACACGGCTCTTAAGAAAGGTGATATTTATAATGAAGCCATCAAATCCGGAGCCAAGGGTTTACCTTTCCTCAAAGTCTTGGATGATGGTGGGATTGAAGGGATTCCCGCTCTAGTATCAACTTTGGATCCTACGAGCAAAGGCAAACTTTTGAGAAGATGTTGTGGTGGGCCCGGTGATCTCATCTTATTTGCTGTGGGTCATCACGTATCGGTCAATAAAACTCTAGACCGGCTTAGAGGATTCTTAGCTAATGAGCTGGGTTTGGTTGATCATTCCAGGCATTCAATTCTGTGGGTAACTGATTTTCCGATGTTTGAGTGGAATGATTCGGAGCAGAGGCTTGAGGCCTTGCATCACCCATTTACGGCTCCGAACCCTGAAGACATGAATGACCTTTCATCTGCCCGTGCCTTAGCTTATGACATGGTTTATAATGGTGTGGAGATTGGAGGTGGAAGCTTGAGAATTTATAAACGAGAGGTCCAGCAGAAGGTCTTGGAGATTGTTGGCATCTCACCAGAACAGGCTGAAGCAAAGTTTGGGTATCTTTTGGAAGCATTAGACATGGGTGCTCCTCCCCATGGTGGAATTGCTTATGGATTGGATCGATTAGTAATGTTATTAGCGGGTGCTAATTCCATCCGGGATGTCATAGCTTTCCCTAAAACGACGACGGCTCAATGTGCCCTCACTCGAGCTCCATCTGAAGTTGATCCACAGCAACTTAAGGGGTTATCCTTTCCTCCCCAGTAA 2019 45.02 MALLLRAFPLTSVRSNTHKFPLHHLTFLKPHFPKSLLRTPKAAFSVTALTQPSSSSSSTETLTPNSNPAAPHPFSDSLKWVSRTGFCGELSSDDVGKRVQLCGWVALHRVHGGLTFLNLRDHTGIVQVATLPDKFPDAHSTIKDLRLEYVVAVEGIIRSRPEDSINKKMKTGTIELAAEHAEVLNAVKSKLPFLVTTVDEAKDSVKEEIRLRYRCLDLRRQQMSFNIMLRHKVVKLIRRYLEDIHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQVARCFRDEDLRADRQPEFTQLDMELSFTTLEDMLSLNEDLIRKVFLEIKGVQLPNPFPRLSYSEAMSRYGSDRPDTRFDLELQDVSDIFADSSFRVFADTLKSRGVIKVICVPSGAKRYSNTALKKGDIYNEAIKSGAKGLPFLKVLDDGGIEGIPALVSTLDPTSKGKLLRRCCGGPGDLILFAVGHHVSVNKTLDRLRGFLANELGLVDHSRHSILWVTDFPMFEWNDSEQRLEALHHPFTAPNPEDMNDLSSARALAYDMVYNGVEIGGGSLRIYKREVQQKVLEIVGISPEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRAPSEVDPQQLKGLSFPPQ 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29252977 29257885 + Conep03aG0155100.1 Cone3ag1050 434509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1050 672 Pfam GAD domain 398 497 IPR029351 -
Cone3ag1050 672 NCBIfam aspartate--tRNA ligase 82 667 IPR004524 GO:0005524(InterPro)|GO:0016874(InterPro)
Cone3ag1050 672 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 82 672 IPR004524 GO:0005524(InterPro)|GO:0016874(InterPro)
Cone3ag1050 672 MobiDBLite consensus disorder prediction 49 74 - -
Cone3ag1050 672 MobiDBLite consensus disorder prediction 49 72 - -
Cone3ag1050 672 PRINTS Aspartyl-tRNA synthetase signature 297 310 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone3ag1050 672 PRINTS Aspartyl-tRNA synthetase signature 606 620 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone3ag1050 672 PRINTS Aspartyl-tRNA synthetase signature 562 578 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone3ag1050 672 PRINTS Aspartyl-tRNA synthetase signature 280 292 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone3ag1050 672 Pfam OB-fold nucleic acid binding domain 99 184 IPR004365 GO:0003676(InterPro)
Cone3ag1050 672 Gene3D - 75 187 IPR012340 -
Cone3ag1050 672 SUPERFAMILY Class II aaRS and biotin synthetases 207 645 IPR045864 -
Cone3ag1050 672 Gene3D - 362 511 IPR004115 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)
Cone3ag1050 672 Gene3D Bira Bifunctional Protein; Domain 2 201 667 IPR045864 -
Cone3ag1050 672 SUPERFAMILY GAD domain-like 379 511 IPR004115 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)
Cone3ag1050 672 CDD EcAspRS_like_N 83 223 IPR047089 -
Cone3ag1050 672 CDD AspRS_core 227 646 IPR047090 -
Cone3ag1050 672 Pfam tRNA synthetases class II (D, K and N) 206 645 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone3ag1050 672 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 229 643 IPR006195 -
Cone3ag1050 672 SUPERFAMILY Nucleic acid-binding proteins 83 185 IPR012340 -
Cone3ag1050 672 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 59 646 - GO:0004815(PANTHER)|GO:0005739(PANTHER)|GO:0006422(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1050 K01876 - - csv:101202872 1092.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1066 Cone-Chr10:7407498 Cone3ag1050 Cone-Chr3:29252977 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34