Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1052 ATGGTTAGACGATCACCAACTAAAATCAACAGGCCGAAAGGCCCCATCAAGGTGAAGCATGTTCTACAAATCTGTTTATTGCTCGGGATTTGCTTTTGGTTAATTTATCAAGTGAAACACTCCCATGATAAGAAGAAAGAGTTTGATGGGAAGGATTTATCTTCAAAATTGTTGATGAAAAGCGAAAGTGATGATGGGAAGATAGTTAAACTTGGAAGGAAAGATCTTCATCCACGTATGGAGGAAGAGGAAGTTAAGAAGAGTGAAAGCCGTGACGAAGATGATGAAGAAGAAAACAGAGGAGAGGAAGAAGAACAGCAAAAGAATGAAGTAGAAGAAGAGCAGGAGAAAGAGGGTGAAGATCGAGGCGAAGAAAGGAGGAATGAGGTAGAAGAAGAGGAAGAGAAACAAGAAGGACAAAGGGATAAAGTAGAAGAGGAAGGGGGTGAAGATCGAGGCGAAGAAAGGAGGAATGGGGTAGAAGAGGAAGAGGAAGCAAATAGACAAGAAGGACAAAGGGAGAAAGTAGAAGAGGAAGGGGAAGAAGAGCAAGGAGAAGAAAAGAATGGTGAAGTAGAAGAAGAACATGAACAAGAGGAAGGAGAAATCAAGAAGAAAGAGACAGAAGAAGATGAGGAGAGAGGAGGTGGAGATGATGAGATAGATAGACACAATCAAGAGAAGGCGGATTCTGAATCCGAACACAAACACAAAGAGGAAGAAGAAAAAGAAAAAGAAGAGGAAGGTGATGACAAGAAGAAGAGAGAGGAAAAGATTGAGGAGGAGGAAGAAGAGAAAGAGAAAGGAGGTGAACATGAAAATGAGCATGAGGCAAGAGAGGAGCAATACAAGGCTGATGATGCTTCTAGTGCGGTGGCCCACAATACCCATTCGACAAAATCCGAAACAGATCAAGTGAGTTTTGAGAAAATGGACAATGAATCAAGAAGCATTGTTAAGGGGGAAATTAATGGGATCCAAAATAGATCAAGGTTGATGGAGGAAAATGTTACTTCCACAGAAAATGGTAACTTTTCCAATCCCATGGATGACTCTCCCCTCAATTCAACCCTAGTTACCCCTCCTAATGATCTTCCCGAAGTGAGCAATAATTTGTCAGAATCATCCGGTTTTCCCCAGAAGAGTAGTCTAAATGAAACTGTAATTGCTTCAGATCTTCCTCAAAATTCCACGATTTTGGTTAAAGCTGAAAATGAAAGCAGATCTTCAGAAACTGAGTCTGATGTATCGGAAGTGATCTCAAGGTCCAACACAACAAATGAGAATAGGGAAGAAACTGCAGGGAATGAGGATTCAAGCAGTGTCGGTGACTCGGGCAGGGAAGGGGATGAAGAATCTGAAGGAGGGCCCCGGGACGTAGTTCAAGATGACCCGATTGATTCCTCAGATTTACATGTTACAGAAGATATGAAAGATGATCGTGTGGATCTTGATACATTACCGGATATAAGAATGGATGTTGATAATATTAGTATCGAAGAAAGTGCAGCTGAATGA 1518 41.5 MVRRSPTKINRPKGPIKVKHVLQICLLLGICFWLIYQVKHSHDKKKEFDGKDLSSKLLMKSESDDGKIVKLGRKDLHPRMEEEEVKKSESRDEDDEEENRGEEEEQQKNEVEEEQEKEGEDRGEERRNEVEEEEEKQEGQRDKVEEEGGEDRGEERRNGVEEEEEANRQEGQREKVEEEGEEEQGEEKNGEVEEEHEQEEGEIKKKETEEDEERGGGDDEIDRHNQEKADSESEHKHKEEEEKEKEEEGDDKKKREEKIEEEEEEKEKGGEHENEHEAREEQYKADDASSAVAHNTHSTKSETDQVSFEKMDNESRSIVKGEINGIQNRSRLMEENVTSTENGNFSNPMDDSPLNSTLVTPPNDLPEVSNNLSESSGFPQKSSLNETVIASDLPQNSTILVKAENESRSSETESDVSEVISRSNTTNENREETAGNEDSSSVGDSGREGDEESEGGPRDVVQDDPIDSSDLHVTEDMKDDRVDLDTLPDIRMDVDNISIEESAAE 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29260597 29262291 - Conep03aG0155300.1 Cone3ag1052 434511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1052 505 Coils Coil 159 209 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 198 262 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 112 175 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 176 197 - -
Cone3ag1052 505 PANTHER MYB-LIKE PROTEIN X 166 339 - -
Cone3ag1052 505 Coils Coil 221 265 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 431 481 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 416 430 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 320 405 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 303 317 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 269 287 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 88 111 - -
Cone3ag1052 505 Coils Coil 80 147 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 44 87 - -
Cone3ag1052 505 MobiDBLite consensus disorder prediction 44 481 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1052 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1145 Cone-Chr17:8437908 Cone3ag1052 Cone-Chr3:29260597 1.65E-14 dispersed
Cone3ag1052 Cone-Chr3:29260597 Cone9ag1411 Cone-Chr9:10485369 9.72E-14 dispersed
Cone10ag1070 Cone-Chr10:7427975 Cone3ag1052 Cone-Chr3:29260597 6.61E-136 wgd
Cone3ag1052 Cone-Chr3:29260597 Cone6ag1486 Cone-Chr6:11803253 9.92E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1052 Cone10ag1070 . . . . . . . . . . . . Sed07g1153 . Cmo16g00317 . . . . Cpe14g00247 Cpe01g00381 Bhi11g01093 Tan01g0597 Cmetu07g1866 . Hepe07g0387 Mch10g0400 . . . . . . . . . . . Cme07g02218
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001422 2 2 3 1 1 2 4 2 2 3 2 2 4 1 0 3 2 4 4 2 1 2 2 2 2 2 2 5 3 1 68