Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1060 ATGGAGGGAGTAGGGCTTTTTTGTTCGATTAATATTTCCCCAATTTCCTCCATTTCTGTTAATCACTATCTTCAACTTTCTTCCTCGTCACCTCTCTCCATCTCTCCATTTTCGAGGAATTTCAGTCTCTCAGGGAGGAAAAGATTAGGTTTAGCTGCGAGTTTTGGATACAAGGGTGAAAGAGAATTGCAAGTTAGCGAGGCTATGGGTTCAGGAAAGGAATCTTCAGAGGTAAACACGAGTATCTATCCACATATAGAGCCTTACAGTACGGGTTTTTTGAAGGTTTCGGATATTCATACCATTTATTGGGAGCAGTCTGGAAATCCAAGTGGCCATCCAGTTGTTTTTCTTCATGGGGGGCCGGGGGGAGGCACTGCACCTAGCAATAGAAGACTGTTTGATCCAGAATTTTATAGAATCATTCTGTTTGATCAGAGAGGAGCTGGAAAAAGTACCCCTCATGCTTGCTTGGAGGAAAACACAACATGGGACCTTATCAACGACATCGAAAAGCTGAGAGAACATTTGCAAATTCCAGAATGGCAGGTATTTGGTGGGTCATGGGGAAGTACACTTTCCCTTGCATATAGCCAATCACATCCTGAAAAGGTTACTGGCTTAGTTCTTAGAGGAATCTTTTTATTGCGGAAGAAAGAGATAGATTGGTTTTATGAAGGTGGTGCAGCTGCTATATTCCCTGACGCTTGGGAACCCTTTAGAGATCTTATTCCAGAAAGTGAGAGGGGATGTTTCGTTGATGCTTATAGTAAGAGACTAAATTCTGAGGATCTAGAAACTCAATATGCAGCTGCTAGAGCATGGACAAAGTGGGAAATGATGACTGCCCATCTTATCCAAAATGAAGAGAACATTAAACGAGGCGATGATGATAAGTTTTCATTGGCATTTGCAAGGATTGAAAATCATTACTTTATAAACAAGGGATTCTTTCCTACCGATTCATTCCTGTTAGATAACATCGACAAGATACGCCACATTAACACTACTATTGTACAGGGAAGGTATGATGTTTGCTGCCCAATGATGTCAGCTTGGGACCTTCATAAAGCTTGGCCAGAAGCTGAATTTAAGATTGTTTCAGATGCCGGTCATTCTGCTAGCGAGCCGGGAATAGCTTTGCAGCTTGTGGCTGCAAATGAGAAACTAAAAGACATTATCCTGAAAAATCGATCTTGA 1200 41.67 MEGVGLFCSINISPISSISVNHYLQLSSSSPLSISPFSRNFSLSGRKRLGLAASFGYKGERELQVSEAMGSGKESSEVNTSIYPHIEPYSTGFLKVSDIHTIYWEQSGNPSGHPVVFLHGGPGGGTAPSNRRLFDPEFYRIILFDQRGAGKSTPHACLEENTTWDLINDIEKLREHLQIPEWQVFGGSWGSTLSLAYSQSHPEKVTGLVLRGIFLLRKKEIDWFYEGGAAAIFPDAWEPFRDLIPESERGCFVDAYSKRLNSEDLETQYAAARAWTKWEMMTAHLIQNEENIKRGDDDKFSLAFARIENHYFINKGFFPTDSFLLDNIDKIRHINTTIVQGRYDVCCPMMSAWDLHKAWPEAEFKIVSDAGHSASEPGIALQLVAANEKLKDIILKNRS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29319610 29322970 - Conep03aG0156100.1 Cone3ag1060 434519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1060 399 PRINTS Alpha/beta hydrolase fold signature 184 197 IPR000073 -
Cone3ag1060 399 PRINTS Alpha/beta hydrolase fold signature 198 211 IPR000073 -
Cone3ag1060 399 PRINTS Alpha/beta hydrolase fold signature 138 153 IPR000073 -
Cone3ag1060 399 NCBIfam prolyl aminopeptidase 87 390 IPR005944 GO:0004177(InterPro)|GO:0005737(InterPro)|GO:0006508(InterPro)
Cone3ag1060 399 PANTHER PROLINE IMINOPEPTIDASE 71 396 IPR005944 GO:0004177(InterPro)|GO:0005737(InterPro)|GO:0006508(InterPro)
Cone3ag1060 399 SUPERFAMILY alpha/beta-Hydrolases 83 374 IPR029058 -
Cone3ag1060 399 PRINTS Prolyl aminopeptidase (S33) family signature 141 152 IPR002410 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone3ag1060 399 PRINTS Prolyl aminopeptidase (S33) family signature 184 198 IPR002410 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone3ag1060 399 PRINTS Prolyl aminopeptidase (S33) family signature 115 123 IPR002410 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone3ag1060 399 Pfam alpha/beta hydrolase fold 114 375 IPR000073 -
Cone3ag1060 399 Gene3D alpha/beta hydrolase 80 394 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1060 K01259 - - csv:101217220 634.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1075 Cone-Chr10:7465502 Cone3ag1060 Cone-Chr3:29319610 1.18E-291 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g821 . Blo03g00047 Bda06g01143 . Bpe07g00301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1060 Cone10ag1075 . . . . . . . . . . . . . . Cmo16g00310 . . . . Cpe14g00242 . Bhi11g01083 . . . . . . . . . . . . . Lsi03g00992 . . Cme07g02225
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007769 1 5 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35