Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1061 ATGGAGCGCATTGCAAGAATCTCAGCTCATCTACTTCCTTCAAATCTCCAGATGGAGGAGGGTTCTAAGTTGAGACGAGCTAATTGCCGTGCAAAAGGTGGGGCTCCGGGATTCAAGGTTGCCATCTTAGGTGCTGCAGGTGGGATTGGTCAACCTCTAGCACTGCTTATGAAGATGAACCCACTTGTCTCGGTCCTTCATCTCTATGATGTCGTCAACGCTCCTGGTGTCACGGCTGACATTAGTCACATGGATACTGGTGCTGTGGTACGCGGTTTTCTTGGACAGCAACAGCTCGAGAGCGCTCTGGCGGGAATGGATCTTGTAATAATACCTGCCGGAGTACCCAGAAAGCCTGGAATGACTAGAGACGATCTTTTCAACATCAATGCCGGGATTGTGAGGACTCTCTGTGAAGGCATTGCTAAATGCTGTCCAAATGCAATCGTCAACTTGATCAGTAATCCCGTTAATTCGACTGTTCCAATTGCAGCAGAAGTGTTCAAGAAAGCCGGCACTTATGACCCAAAAAGACTTTTGGGTGTTACCATGCTTGATGTCGTGAGAGCCAACACCTTTGTGGCCGAAGTTCTCGGACTTGATCCTAGGGAAGTTGATGTTCCGGTTGTTGGAGGTCATTCTGGAGTGACCATTTTACCCCTCCTTTCCCAGGTCAAGCCTCCTAGCTCATTTACCCATGAAGAAATCAAGTACCTGACAAACCGCATACAAAATGGTGGAACAGAAGTTGTCGAGGCAAAAGCCGGAGCTGGCTCTGCTACACTTTCAATGGCCTATGCAGCTGTTAAATTTGCGGATGCATGCCTTCGTGGATTAAGAGGAGATGCCGGAGTTATTGAATGTGCTTTTGTAGATTCTCAGGTGACTGAGCTTCCTTTCTTTGCAACCAAGGTGCGGCTTGGTCGCACCGGAGCTGAGGAGATCTACCAGCTCGGTCCACTAAATGAGTATGAAAGGGTCGGGTTGGAGAAAGCCAAGAAAGAGTTAGAAGCAAGCATTCAGAAAGGGGTGTCCTTTATCAGGAAATGA 1050 48.29 MERIARISAHLLPSNLQMEEGSKLRRANCRAKGGAPGFKVAILGAAGGIGQPLALLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLESALAGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPSSFTHEEIKYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVDSQVTELPFFATKVRLGRTGAEEIYQLGPLNEYERVGLEKAKKELEASIQKGVSFIRK 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29323152 29326314 - Conep03aG0156200.1 Cone3ag1061 434520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1061 349 FunFam Malate dehydrogenase 183 349 - -
Cone3ag1061 349 Pfam lactate/malate dehydrogenase, NAD binding domain 39 181 IPR001236 GO:0016491(InterPro)
Cone3ag1061 349 ProSitePatterns Malate dehydrogenase active site signature. 182 194 IPR001252 GO:0006108(InterPro)|GO:0016615(InterPro)
Cone3ag1061 349 NCBIfam malate dehydrogenase 39 348 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Cone3ag1061 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 181 IPR036291 -
Cone3ag1061 349 Gene3D - 30 182 - -
Cone3ag1061 349 FunFam Malate dehydrogenase 36 182 - -
Cone3ag1061 349 CDD MDH_glyoxysomal_mitochondrial 38 347 IPR010097 GO:0006099(InterPro)|GO:0030060(InterPro)
Cone3ag1061 349 PANTHER MALATE AND LACTATE DEHYDROGENASE 28 348 - GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0030060(PANTHER)
Cone3ag1061 349 Gene3D - 183 349 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cone3ag1061 349 SUPERFAMILY LDH C-terminal domain-like 182 347 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cone3ag1061 349 PIRSF Lac_mal_DH 37 346 IPR001557 GO:0016616(InterPro)|GO:0019752(InterPro)
Cone3ag1061 349 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 183 346 IPR022383 GO:0016616(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1061 K00026 - - vvi:100232924 639.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1034 Cone-Chr14:8720462 Cone3ag1061 Cone-Chr3:29323152 3.67E-143 dispersed
Cone15ag1020 Cone-Chr15:8483131 Cone3ag1061 Cone-Chr3:29323152 2.59E-143 dispersed
Cone19ag0070 Cone-Chr19:432984 Cone3ag1061 Cone-Chr3:29323152 1.74E-134 dispersed
Cone10ag1076 Cone-Chr10:7476562 Cone3ag1061 Cone-Chr3:29323152 3.42E-92 wgd
Cone3ag1061 Cone-Chr3:29323152 Cone6ag1493 Cone-Chr6:11828828 2.61E-215 wgd
Cone3ag1061 Cone-Chr3:29323152 Cone9ag1417 Cone-Chr9:10509362 1.56E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g823 . . . . . Bpe12g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1061 Cone10ag1076 . . . . . . Bda15g00476 . . . . Bma08g00024 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005288 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 39