Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1066 ATGGAGCTTGGTGTTATCAAAGATACATTTGAACATATTGTTAAGAAGCAGAAACTCTCTCTTTCAGTGTCCAGAGAAGTAATCGACCAAGTTAGCCATGAAATCGTACAAGCCTCGGCTCAATTCCAGAGAGAACCCAATGAGTCTTCTGATCAGAAATCCATCTTCTTGCACCTAAAATCAAACCTCAGCTCAATGGACCCTCTCCACCAGCTTGAAGAAGCACAAAAGGAACAAAACCTAAAACTAAGCAAGTTCCCAAAAATCCTCGGAAAACACTTCAATCCCGACATATCAAAGGCTTCTAGAAACGTCGATTTTGATATTCGGATTCTGAATCAGTTGATTGCTACCCATTTTTACCGGCAAGGCTTGTTTGAAATAGGAGATAGCATGACACAAGAAACAGGAGAAACTGAGCTCACTCCAATTAAATCCCACTTTGTGCAAATGCATGAGATCCTTGAAGCAGTGAAGATTAAGAATCTAGAACCAGCTCTAAAATGGACAGCAACCAATCATGAAAAGCTGAAGCAGAACAATTCCAATCTGGAATTTAAACTCCACTGCCTCCAGTTTGTAGAGATTCTACAAAATAAAACTCAAGCTCAAGCCCTGGACTATGCTAGAACCCACCTTGCTCAATTCGCCTCACTTCATTCTATTAACAAGGTTAAATTCCAGAAGCTTATGTGTAGTCTATTATGGTCCGGTAGACTGGAAAAGTCCCCTTATAGCGGATTACTCTCTCCGACCGGATGGAATAAACTGCCAGAAGAGCTGACCAGGCAGTTCTGTAACCTACTCGGTCAATCGTACAACTGTTCATTGAGAATTGTGATTGAAGCCGGTTTTGATGGGTTACCTACCCTTTTGAAGCTTGCTAATGTGATGGCTGCTAAAAAGCAAGAATGGCTCGAGATGAAACAGTTGCCGGTCCCACTAGAGCTGGGTAAGAAATTTCAGTTCCATTCTATTTTTGTCTGTCCGGTTAGTAGGGATCAAGGGAGTGAAGAGAATCCGCCCATGTTAATGCCCTGCTTGCATGTTCTTTGCAAGCAATCGATCGAGAGGATGTCGAAAGGTAATAGTAAGAAATTTAAGTGTCCATATTGCCCAGTTCAGGTTTCTGTTTCACAGTGTAGGCAACTTTATTTTTAA 1161 41.6 MELGVIKDTFEHIVKKQKLSLSVSREVIDQVSHEIVQASAQFQREPNESSDQKSIFLHLKSNLSSMDPLHQLEEAQKEQNLKLSKFPKILGKHFNPDISKASRNVDFDIRILNQLIATHFYRQGLFEIGDSMTQETGETELTPIKSHFVQMHEILEAVKIKNLEPALKWTATNHEKLKQNNSNLEFKLHCLQFVEILQNKTQAQALDYARTHLAQFASLHSINKVKFQKLMCSLLWSGRLEKSPYSGLLSPTGWNKLPEELTRQFCNLLGQSYNCSLRIVIEAGFDGLPTLLKLANVMAAKKQEWLEMKQLPVPLELGKKFQFHSIFVCPVSRDQGSEENPPMLMPCLHVLCKQSIERMSKGNSKKFKCPYCPVQVSVSQCRQLYF 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29341417 29343301 + Conep03aG0156700.1 Cone3ag1066 434525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1066 386 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 5 386 IPR045098 GO:0004842(InterPro)|GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0034657(PANTHER)|GO:0043161(PANTHER)|GO:0043161(InterPro)
Cone3ag1066 386 Pfam CTLH/CRA C-terminal to LisH motif domain 148 291 IPR024964 -
Cone3ag1066 386 SMART toby_final6 200 297 IPR013144 -
Cone3ag1066 386 ProSiteProfiles Gid-type RING finger profile. 329 372 IPR044063 GO:0061630(InterPro)
Cone3ag1066 386 SMART ctlh 147 204 IPR006595 -
Cone3ag1066 386 Pfam RING-type zinc-finger 329 370 IPR027370 -
Cone3ag1066 386 CDD dRING_Rmd5p-like 327 374 IPR037683 -
Cone3ag1066 386 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 147 204 IPR006595 -
Cone3ag1066 386 FunFam Regulator of gluconeogenesis Rmd5 321 385 - -
Cone3ag1066 386 SUPERFAMILY RING/U-box 323 384 - -
Cone3ag1066 386 SMART ring_2 329 372 IPR001841 -
Cone3ag1066 386 ProSiteProfiles LIS1 homology (LisH) motif profile. 108 140 IPR006594 GO:0005515(InterPro)
Cone3ag1066 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 385 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1066 K23333 - - vvi:100252683 494.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1066 Cone-Chr3:29341417 Cone7ag1902 Cone-Chr7:12189043 2.43E-149 dispersed
Cone3ag1066 Cone-Chr3:29341417 Cone6ag1501 Cone-Chr6:11886931 2.25E-152 wgd
Cone3ag1066 Cone-Chr3:29341417 Cone9ag1427 Cone-Chr9:10597949 6.30E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0053736 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1