Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1079 ATGTATGTTTCCGGAGAGATGAATAGCAACAGTAGCTTACAGAATCAGGTGGAAGAGGAAGAAGACGACGTTACAGGTGCTGAAGAGTCTATAGACAACCCTCAGATGCGGTTCGAGGATGGTGGAAATGTAAGCGGTGCAGTCGCGATGATGAACGCCGTTCCAAACGTCGCTGCTGCCGGAGGTGCTGTATATGCTCCTGGAACGGATTACCACCAGGTGCCGGGAAACGGTAGCGCTGATCAGCTCACACTTTCGTTTCAAGGAGAGGTTTATGTCTTTGATGCTGTTTCCCCTGATAAGGTTCAAGCGGTACTGTTACTCTTGGGTGGATATGAAATCCCTTCTGGAATCCCTGCTGTGGGAACTGCTACTGTTGTTCCAAGGGGTGTGACTGAATTTCCTACGAGGTTAATACAACCCCAAAGAGCTGCTTCCTTAAATCGATTTCGAGAGAAGAGGAAAGAAAGGTGTTTTGATAAGAAAATCCGTTACAATGTGCGCAAAGAAGTTGCACTCAGGATGCAGCGAAAGAAAGGCCAGTTCACATCATCTAAAGCTACGTTTGATGAAGCGGGCCCAGGCATTTCTGCCTGGACTCCATCACAGGGCTCTGTACAAGATGAGAGCATGCAGGAAACTTCATGTACACACTGTGGAATCAGTTCAAAGTCAACTCCAATGATGCGTCGTGGGCCAGCTGGTCCAAGAAGTCTATGTAATGCCTGCGGGCTCAAGTGGGCCAATAAGGTTTGTGTAGCTGCAACTGATTTATTGCATATGCCCCTGGACTGGTTGTGA 801 48.19 MYVSGEMNSNSSLQNQVEEEEDDVTGAEESIDNPQMRFEDGGNVSGAVAMMNAVPNVAAAGGAVYAPGTDYHQVPGNGSADQLTLSFQGEVYVFDAVSPDKVQAVLLLLGGYEIPSGIPAVGTATVVPRGVTEFPTRLIQPQRAASLNRFREKRKERCFDKKIRYNVRKEVALRMQRKKGQFTSSKATFDEAGPGISAWTPSQGSVQDESMQETSCTHCGISSKSTPMMRRGPAGPRSLCNACGLKWANKVCVAATDLLHMPLDWL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29455861 29459745 + Conep03aG0158300.1 Cone3ag1079 434538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1079 266 PANTHER GATA TRANSCRIPTION FACTOR 28 22 250 IPR045280 GO:0006355(InterPro)
Cone3ag1079 266 Pfam CCT motif 143 185 IPR010402 GO:0005515(InterPro)
Cone3ag1079 266 Pfam GATA zinc finger 216 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1079 266 SMART tify_2 76 111 IPR010399 -
Cone3ag1079 266 SMART GATA_3 210 263 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1079 266 Coils Coil 10 30 - -
Cone3ag1079 266 Gene3D - 206 258 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone3ag1079 266 CDD ZnF_GATA 215 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1079 266 ProSiteProfiles Tify domain profile. 76 111 IPR010399 -
Cone3ag1079 266 Pfam tify domain 80 110 IPR010399 -
Cone3ag1079 266 ProSiteProfiles CCT domain profile. 143 185 IPR010402 GO:0005515(InterPro)
Cone3ag1079 266 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 253 - -
Cone3ag1079 266 MobiDBLite consensus disorder prediction 1 37 - -
Cone3ag1079 266 MobiDBLite consensus disorder prediction 1 15 - -
Cone3ag1079 266 ProSitePatterns GATA-type zinc finger domain. 216 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1183 Cone-Chr17:8671190 Cone3ag1079 Cone-Chr3:29455861 4.63E-65 dispersed
Cone20ag0548 Cone-Chr20:3052702 Cone3ag1079 Cone-Chr3:29455861 3.20E-66 dispersed
Cone3ag1079 Cone-Chr3:29455861 Cone7ag0368 Cone-Chr7:1597065 9.52E-07 dispersed
Cone10ag0956 Cone-Chr10:5062326 Cone3ag1079 Cone-Chr3:29455861 4.58E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45836 PF17135 Ribosomal_L18 5.60E-28 CL0588 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1079 - - - 0.0