Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1079 ATGTATGTTTCCGGAGAGATGAATAGCAACAGTAGCTTACAGAATCAGGTGGAAGAGGAAGAAGACGACGTTACAGGTGCTGAAGAGTCTATAGACAACCCTCAGATGCGGTTCGAGGATGGTGGAAATGTAAGCGGTGCAGTCGCGATGATGAACGCCGTTCCAAACGTCGCTGCTGCCGGAGGTGCTGTATATGCTCCTGGAACGGATTACCACCAGGTGCCGGGAAACGGTAGCGCTGATCAGCTCACACTTTCGTTTCAAGGAGAGGTTTATGTCTTTGATGCTGTTTCCCCTGATAAGGTTCAAGCGGTACTGTTACTCTTGGGTGGATATGAAATCCCTTCTGGAATCCCTGCTGTGGGAACTGCTACTGTTGTTCCAAGGGGTGTGACTGAATTTCCTACGAGGTTAATACAACCCCAAAGAGCTGCTTCCTTAAATCGATTTCGAGAGAAGAGGAAAGAAAGGTGTTTTGATAAGAAAATCCGTTACAATGTGCGCAAAGAAGTTGCACTCAGGATGCAGCGAAAGAAAGGCCAGTTCACATCATCTAAAGCTACGTTTGATGAAGCGGGCCCAGGCATTTCTGCCTGGACTCCATCACAGGGCTCTGTACAAGATGAGAGCATGCAGGAAACTTCATGTACACACTGTGGAATCAGTTCAAAGTCAACTCCAATGATGCGTCGTGGGCCAGCTGGTCCAAGAAGTCTATGTAATGCCTGCGGGCTCAAGTGGGCCAATAAGGTTTGTGTAGCTGCAACTGATTTATTGCATATGCCCCTGGACTGGTTGTGA 801 48.19 MYVSGEMNSNSSLQNQVEEEEDDVTGAEESIDNPQMRFEDGGNVSGAVAMMNAVPNVAAAGGAVYAPGTDYHQVPGNGSADQLTLSFQGEVYVFDAVSPDKVQAVLLLLGGYEIPSGIPAVGTATVVPRGVTEFPTRLIQPQRAASLNRFREKRKERCFDKKIRYNVRKEVALRMQRKKGQFTSSKATFDEAGPGISAWTPSQGSVQDESMQETSCTHCGISSKSTPMMRRGPAGPRSLCNACGLKWANKVCVAATDLLHMPLDWL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29455861 29459745 + Conep03aG0158300.1 Cone3ag1079 434538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1079 266 PANTHER GATA TRANSCRIPTION FACTOR 28 22 250 IPR045280 GO:0006355(InterPro)
Cone3ag1079 266 Pfam CCT motif 143 185 IPR010402 GO:0005515(InterPro)
Cone3ag1079 266 Pfam GATA zinc finger 216 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1079 266 SMART tify_2 76 111 IPR010399 -
Cone3ag1079 266 SMART GATA_3 210 263 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1079 266 Coils Coil 10 30 - -
Cone3ag1079 266 Gene3D - 206 258 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone3ag1079 266 CDD ZnF_GATA 215 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag1079 266 ProSiteProfiles Tify domain profile. 76 111 IPR010399 -
Cone3ag1079 266 Pfam tify domain 80 110 IPR010399 -
Cone3ag1079 266 ProSiteProfiles CCT domain profile. 143 185 IPR010402 GO:0005515(InterPro)
Cone3ag1079 266 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 253 - -
Cone3ag1079 266 MobiDBLite consensus disorder prediction 1 37 - -
Cone3ag1079 266 MobiDBLite consensus disorder prediction 1 15 - -
Cone3ag1079 266 ProSitePatterns GATA-type zinc finger domain. 216 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1079 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1183 Cone-Chr17:8671190 Cone3ag1079 Cone-Chr3:29455861 4.63E-65 dispersed
Cone20ag0548 Cone-Chr20:3052702 Cone3ag1079 Cone-Chr3:29455861 3.20E-66 dispersed
Cone3ag1079 Cone-Chr3:29455861 Cone7ag0368 Cone-Chr7:1597065 9.52E-07 dispersed
Cone10ag0956 Cone-Chr10:5062326 Cone3ag1079 Cone-Chr3:29455861 4.58E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone15ag0833 . 1 181 Tify Gene Family AT4G14713 53.9 7.1e-46 181.4
Cone14ag0872 . 1 190 Tify Gene Family AT4G14713 51.8 2.3e-44 176.4
Cone15ag0833 . 1 287 Tify Gene Family AT4G14720 51.0 1.7e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45836 PF17135 Ribosomal_L18 5.60E-28 CL0588 Cone TF