Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1105 ATGTATAATATTCATCTTATAACAATTCTCAATATCCAACTTTTAAACTTGATTTTTAGTCTAAAGAGAGCCACAGTTCAGAGCTTGTATGATAATTTTGAAGCTCAGTCCGATGTTATGACCCGAGCAAAACTAGTTCAAGAAAAACTATCGCCCAAAAATCCAAGTCTTCTTAAGGTTATGCTCCCTTCACATGTTACTGGTGGATTTTGGCTGGGACTTCCGAAACAATGGTGTGTTACAAATTTGCCCAAGCTTGATGTTAAAATAGTGTTGGAAGATGAAGAAGGGGAAGAACATGAAATCAAATATCTTTCCGAAAAAGTTGGTTTAAGTGCTGGGTGGAGAGGGTTTTCCATTGCCCATAAATTGATGGAGGGAGATATTGTAATCTTCCATTTAGTCAAGCCTTCTAAAATGAAGGTTTACATTGTGAGATCTAATCATACCACCGAGTTCGTTGATGCTCTTACCCTTTCTAAAACAATGGCTTCCAGAAAAACAGAAATCGCTCCCTGTCATGAAAAGAAAGACATCATTCCCTATGAAAAGAAAGAATATGAAGAGCCCGTCCTACATCTCCCAGATATCCATAATGAAATTCCTTTCCCTCAAATTGAAAGTGATAATGAAGATCTTGGCTCAGAAGGAGTGGATGGAATCCGCCTATCGGAATCTACCATTGACTTTAACCAAGTGAGGAGTATCACAGATTTCAACATCATTCTTAATGGCTTAGTCATAGACTTTGAATTCTCGCAGCACCTAAAGTCGAAGTACTATGAACTATGTTCGAGTCAGAAGACTTACCTTCACGGCCGTCTTCTTGAGGGGCTTAATTGTAAATTAGTGTCGGGGATAATATCGGAAACGATCAATATAGCCGATGCTATTGAAGCATGCAAGATTTCTACCCCACAAGACTACATGGAAACATGGGATAAAACTTTGGAGGCCTTTGAGGTGTTAGGAATGACTGTGGGGTTTCTTCGGGTTCGGTTGAACAATCTTATTGGTCTTGCTAAGAAATCGAAGAAAGCTAGTAAGGAAGAGATTGTGTAG 1062 38.98 MYNIHLITILNIQLLNLIFSLKRATVQSLYDNFEAQSDVMTRAKLVQEKLSPKNPSLLKVMLPSHVTGGFWLGLPKQWCVTNLPKLDVKIVLEDEEGEEHEIKYLSEKVGLSAGWRGFSIAHKLMEGDIVIFHLVKPSKMKVYIVRSNHTTEFVDALTLSKTMASRKTEIAPCHEKKDIIPYEKKEYEEPVLHLPDIHNEIPFPQIESDNEDLGSEGVDGIRLSESTIDFNQVRSITDFNIILNGLVIDFEFSQHLKSKYYELCSSQKTYLHGRLLEGLNCKLVSGIISETINIADAIEACKISTPQDYMETWDKTLEAFEVLGMTVGFLRVRLNNLIGLAKKSKKASKEEIV 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29632091 29633681 - Conep03aG0160900.1 Cone3ag1105 434564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1105 353 SUPERFAMILY DNA-binding pseudobarrel domain 50 148 IPR015300 -
Cone3ag1105 353 ProSiteProfiles B3 DNA-binding domain profile. 57 148 IPR003340 GO:0003677(InterPro)
Cone3ag1105 353 SMART B3_2 57 148 IPR003340 GO:0003677(InterPro)
Cone3ag1105 353 CDD B3_DNA 55 146 IPR003340 GO:0003677(InterPro)
Cone3ag1105 353 Pfam B3 DNA binding domain 58 147 IPR003340 GO:0003677(InterPro)
Cone3ag1105 353 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 149 IPR044837 -
Cone3ag1105 353 Gene3D - 36 149 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1105 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0745 Cone-Chr16:8494108 Cone3ag1105 Cone-Chr3:29632091 5.09E-13 dispersed
Cone20ag0183 Cone-Chr20:791901 Cone3ag1105 Cone-Chr3:29632091 1.12E-39 dispersed
Cone3ag1105 Cone-Chr3:29632091 Cone9ag1316 Cone-Chr9:9897728 7.14E-70 dispersed
Cone3ag1105 Cone-Chr3:29632091 Cone6ag1385 Cone-Chr6:11157816 2.93E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g432 . . . . . . . . . Cmo11g01356 . . . . . Cpe04g00274 . . . . . . . . Cla02g00594 . . . . . . . . Cone3ag1105 . . . . Cme01g00041 . . . . . . . . . . . . . . . . Cpe01g00450 . . . . . . . . . . . . . . . . Chy01g00047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012618 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 5 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45837 None None None None Cone TF