Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1111 ATGGAGATTGGAATGGTGCTTAATATCCCTCAGGCGATCGATTTCAACTTTGACAGTGGCTGCTCTACTCCTTTCATGACGGCTCCTTCCAGTCCTCAAAGATTTGGAAACTTCTTCCTCAGCGCTCCCACCAGTCCCACCAAATCGCGTGCTGCCACCTTCTATCGTGACCATAACAATCTCGTTCCGACGTGTAGTAGTACTAGTACTACTACTTCAACCTCTCTAGTACCTTTCGGGTGGGAAGAAAGGCCTGGATTTGCCAAATCTAATGGAGACAGCTTTACTGATGATATCAATGAGGATTTTGAGTTCAATTTTAGCGGACAATTGGATAGAACTTCTTTATCAGCAGACGAGCTTTTCGATTGTGGCAAGATCAAGCCTCTCAAGCCACCACCTCGCTTGCAGGTCATTGAAAATTCCGTACCAACCAACATCAGTTTCTCACCTAGATCGAAGATTTCACAAGGTAAGAAAATGGTTCAAGAGGTGTTCTCCCCTCGACATAAAAAGGATTTCGATCCATTTGAAGCAGCGTTGAAAGAGACTCGTGCATTATCACCTTATGAAGAATGGAGCAGTAGAGACAGCAGACAGATATACAAGGAACAAAATCGAGGAAGATCAGAGAGAATTCAAAGCTCATCTTCGTTAAATTTTACACGTAAAGGAACTAGATCCTTGTCTCCTTTAAGAGCATCTGATATTGTACTTGAGGAAGAAGATGAAAATTCATCAAACACAAACCCTACTAGTGGTTCTACAACCGCAAGCAATCCCAAACCAACTTCATCTTCCATCTTGTCCTCGATTCCATTTTCCAAAGGGTATAGAAAATGGAGGCTCAAAGATTTTCTACTATTTCGGAGCGCGTCAGAAGGTAGGGTAACGGATAAAGATCCTTTAAGTAGGGCGGTGGATCGAGATGCAAAAAGCTCAAGTTTCCGATCGGTTGACAGTTCCAGCTCACAGAGCTCGAGAAGAAGAGGTCCTGTCTCAGCTCACGAACACCATTACACGGTGAACCGAGCGGTTTCAGAGGAGATGAAGAAGAAAACTTTCTTGCCTTACAAGCATGGTTTGTTAGGTTGCTTAGGGTTCAATCCCGGCATGCGTGATATTTCCAGGGGACTTGGTTTTTGA 1146 43.89 MEIGMVLNIPQAIDFNFDSGCSTPFMTAPSSPQRFGNFFLSAPTSPTKSRAATFYRDHNNLVPTCSSTSTTTSTSLVPFGWEERPGFAKSNGDSFTDDINEDFEFNFSGQLDRTSLSADELFDCGKIKPLKPPPRLQVIENSVPTNISFSPRSKISQGKKMVQEVFSPRHKKDFDPFEAALKETRALSPYEEWSSRDSRQIYKEQNRGRSERIQSSSSLNFTRKGTRSLSPLRASDIVLEEEDENSSNTNPTSGSTTASNPKPTSSSILSSIPFSKGYRKWRLKDFLLFRSASEGRVTDKDPLSRAVDRDAKSSSFRSVDSSSSQSSRRRGPVSAHEHHYTVNRAVSEEMKKKTFLPYKHGLLGCLGFNPGMRDISRGLGF 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29683083 29684271 - Conep03aG0161500.1 Cone3ag1111 434570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1111 381 MobiDBLite consensus disorder prediction 211 229 - -
Cone3ag1111 381 MobiDBLite consensus disorder prediction 298 315 - -
Cone3ag1111 381 MobiDBLite consensus disorder prediction 244 269 - -
Cone3ag1111 381 MobiDBLite consensus disorder prediction 202 269 - -
Cone3ag1111 381 PANTHER OS07G0619500 PROTEIN 26 370 - -
Cone3ag1111 381 MobiDBLite consensus disorder prediction 316 330 - -
Cone3ag1111 381 MobiDBLite consensus disorder prediction 298 344 - -
Cone3ag1111 381 Pfam Protein of unknown function (DUF1645) 118 357 IPR012442 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1111 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1122 Cone-Chr10:8059860 Cone3ag1111 Cone-Chr3:29683083 6.23E-115 dispersed
Cone1ag1545 Cone-Chr1:57363495 Cone3ag1111 Cone-Chr3:29683083 2.78E-16 dispersed
Cone3ag1111 Cone-Chr3:29683083 Cone7ag1394 Cone-Chr7:10006398 2.14E-51 dispersed
Cone10ag1121 Cone-Chr10:8042470 Cone3ag1111 Cone-Chr3:29683083 2.06E-232 wgd
Cone12ag1106 Cone-Chr12:8983211 Cone3ag1111 Cone-Chr3:29683083 4.09E-100 wgd
Cone3ag1111 Cone-Chr3:29683083 Cone8ag1146 Cone-Chr8:10026059 1.83E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g450 . Blo15g00731 . . Bpe07g00395 . . Bma12g00470 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1106 Cone8ag1146 Cone3ag1111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004371 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 1 1 1 42