Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1116 ATGGTAATAACAAACCTTCAGGGATCCCGCTTTCATCGTGTCATAAAAGGATTTATGGTACAAGGTGGAGATATATCTGCTGGCGATGGTACCGGTGGAGAATCTATTTATGGTTTGAAGTTTGAAGATGAAAATCTTGAACTGAAACATGAAAGGAAAGGAATGTTATCAATGGCTAACTCTGGTCCTGGCACAAATGGGTCTCAGTTTTTCATCACAACAACTCGTACGTCCCATTTGGATGGAAAACATGTGATCTTTGGGAGGGTAGTGAAGGGAATGGGAGTTGTTCGTTCGATCGAGCATTTTACAATTGGTGAAAATGATCGTCCTACTTTGGATGTCATCATTGCCGATTGTGGGGAAATTCCTGAGGGGTTAGATGATGGTATATCAAATTTTTTCAAAGATGGTGATGCCTATCCTGACTGGCCAACTGACCTTGATCAGTGTCCTGATGAGCTCTCTTGGTGGATAGATGCTGTAGATACTGTCAAGGCTTTTGGTAATGAACATTACAAGAAACAAGATTTTAAAATGGCTCTGAGAAAGTACCGGAAGGCTTTACGCTATCTTGATATATGTTGGGAGAAAGATGGAATTGATGAAGAGAAAAGTTCAAGTCTGAGAAAGACGAAGTCCCAGATATTCACAAATAGTTCTGCTTGCAAATTGAAGTTGGGGGATCTGAAAGGAGCATTGCTGGACACTGATTTTGCAATGCGTGATGGAGAGAACAATGTGAAAGCCTTGTTTCGCCAAGGTCAGGCATATATTGCACTTAATGACATCGATGCTGCAGTTGAAAGCTTTAAGAAGGCTTTGGATTTGGAGCCCAATGACGCTGTAATAAAGAAAGAGCTGGCTGCTGCCAAGAAAAAGATTGCTGATAGACATGATCAGGAGAGGAAGGCATTTAGCAAGATGTTTCAATAG 936 41.24 MVITNLQGSRFHRVIKGFMVQGGDISAGDGTGGESIYGLKFEDENLELKHERKGMLSMANSGPGTNGSQFFITTTRTSHLDGKHVIFGRVVKGMGVVRSIEHFTIGENDRPTLDVIIADCGEIPEGLDDGISNFFKDGDAYPDWPTDLDQCPDELSWWIDAVDTVKAFGNEHYKKQDFKMALRKYRKALRYLDICWEKDGIDEEKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGENNVKALFRQGQAYIALNDIDAAVESFKKALDLEPNDAVIKKELAAAKKKIADRHDQERKAFSKMFQ 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29737320 29741748 - Conep03aG0162000.1 Cone3ag1116 434575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1116 311 Gene3D - 3 127 IPR029000 -
Cone3ag1116 311 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 122 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag1116 311 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 69 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag1116 311 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 11 23 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag1116 311 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 82 97 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag1116 311 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 69 81 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag1116 311 ProSiteProfiles TPR repeat region circular profile. 248 281 - -
Cone3ag1116 311 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone3ag1116 311 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 123 - -
Cone3ag1116 311 SUPERFAMILY Cyclophilin-like 7 126 IPR029000 -
Cone3ag1116 311 SMART tpr_5 248 281 IPR019734 GO:0005515(InterPro)
Cone3ag1116 311 SMART tpr_5 162 195 IPR019734 GO:0005515(InterPro)
Cone3ag1116 311 Gene3D Tetratricopeptide repeat domain 162 311 IPR011990 GO:0005515(InterPro)
Cone3ag1116 311 SUPERFAMILY TPR-like 159 304 IPR011990 GO:0005515(InterPro)
Cone3ag1116 311 FunFam peptidyl-prolyl cis-trans isomerase D 160 311 - -
Cone3ag1116 311 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 1 123 - -
Cone3ag1116 311 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515(InterPro)
Cone3ag1116 311 Pfam Tetratricopeptide repeat 248 281 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1116 K05864 - - mdm:114824803 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1116 Cone-Chr3:29737320 Cone7ag1893 Cone-Chr7:12159797 1.22E-45 dispersed
Cone10ag1127 Cone-Chr10:8096310 Cone3ag1116 Cone-Chr3:29737320 5.68E-206 wgd
Cone3ag1116 Cone-Chr3:29737320 Cone8ag1151 Cone-Chr8:10037488 3.94E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g464 . . . . . Bpe12g00062 . . . Cmo11g01347 . Cma20g00888 . Car20g00765 . Cpe04g00267 . Bhi05g01141 . . . Hepe02g0569 . . Cla02g00581 Cam02g0614 Cec02g0613 Cco02g0629 Clacu02g0610 Cmu02g0607 Cre02g0938 . Cone8ag1151 Cone3ag1116 Cone10ag1127 Lsi10g00310 Csa07g00780 Chy11g00439 Cme01g00031 . Blo13g00569 Bda15g00028 . . . . . Sed05g3656 . Cmo20g00895 Cma11g01765 . Car11g01085 . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . Cla09g01711 Cam09g1807 Cec09g1868 Cco09g1961 . . Cre01g0699 Lsi11g01025 Csa02g01199 Chy01g00036 Cme11g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002414 1 5 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 2 6 1 61