Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1121 ATGCCCCGGCCATGTTTCCACAAGCTTATTATACCATCTACTATCCAGGCTAGGCAATTGAGAATTCCCGAAAACTTTATCAGGAAAATTAGGGATGACCTTTCTGCAGTTGCTAAACTTGCTATCCCAGATGGTCATGTTTGGCATGTTGGGCTGAAGAAACATAATAATAGATATTGCTTTCAAGATGGTTGGTCTGAATTTGTAGACCGTTATTCTATTCGTGTTGGGTACCTCTTAGTGTTCCGATATGAAGGGAATTCAGCTTTTAGTGTTTTTATCTTTAACCTCATTCCTTCCGAAATAAACTATCAATCCGCTGCTCTTACTTGCTCTCAAGGCACCAATTATTACAACCATAATCATGTTTTTGACGAAATGGAAGATGATGACTTAGTTGAACAAATGCCTTCATCAAATCCATCTGCTAATTCCGGTTCTTTGAGAAACAAACTTTTGGGTGAACGAGGAAACCAACTGATTTCCAACAAACTTGGAAATCCTCTACCGCAAAATTTGCTCAATGGATCAAAGCTTAAGAATTGTGTGAATTGGAATGATGAATGGAACTTGCATTTATCTAGGGCGGGTGGTAATAATTTGCCAGCAGATCTACAATCTAGTCGAGAAATTGGTGTTCCATTTAGTGTGACGGATAGTAAAAGATCTGTGGACAAGGTGAGATCGCATGCTCTGGATGATGATTTACGGAAAATCAAATTGAGCGGCAAAAAGAAGCGGAAATTTGCTTCTGATCAAGGGCAACATTCATCTACTCAAAATGAGGAGGAAGGCGATATGGGCTTTAGATTTTACGAAAGTGCTTCTGTTCGAAAGAGAACAGTGACAGCCGAAGAAAGGGAAAGGATTGTTAATGCAGCTAAAACTTTTGAGCCTGCAAATCCTTTTTGCCGGGTTGTTTTGCGACCATCCTATCTCTATAAGGGTTGTATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGCGGGGTTGCCGGATTCATCAAACTTCAGATCTACAATGGAAGGCAGTGGCCCGTCAGATGTCGTTATAATGGTGGAGGGGGAGCTAAATTAAGCCAAGGATGGTATGAATTCTGCCTCGAGAATAATTTAGGGGAAGGAGATGTCTGTGTCTTTGAGTCGCTTCGGACAAGTGAAATTATACTTAAAGTCACAATGTTCCGAGTGTCAGCAGATAATGGACCCATTAACCCGCCTCATCCTTTGCAGCCAAGTGTTGGCCAATTTAGATTGATTAGAAGTTAA 1275 40.55 MPRPCFHKLIIPSTIQARQLRIPENFIRKIRDDLSAVAKLAIPDGHVWHVGLKKHNNRYCFQDGWSEFVDRYSIRVGYLLVFRYEGNSAFSVFIFNLIPSEINYQSAALTCSQGTNYYNHNHVFDEMEDDDLVEQMPSSNPSANSGSLRNKLLGERGNQLISNKLGNPLPQNLLNGSKLKNCVNWNDEWNLHLSRAGGNNLPADLQSSREIGVPFSVTDSKRSVDKVRSHALDDDLRKIKLSGKKKRKFASDQGQHSSTQNEEEGDMGFRFYESASVRKRTVTAEERERIVNAAKTFEPANPFCRVVLRPSYLYKGCIMYLPSCFAEKNLSGVAGFIKLQIYNGRQWPVRCRYNGGGGAKLSQGWYEFCLENNLGEGDVCVFESLRTSEIILKVTMFRVSADNGPINPPHPLQPSVGQFRLIRS 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29791630 29795480 + Conep03aG0162500.1 Cone3ag1121 434580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1121 424 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Cone3ag1121 424 Gene3D - 1 97 IPR015300 -
Cone3ag1121 424 Pfam B3 DNA binding domain 306 399 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 Pfam B3 DNA binding domain 7 93 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 ProSiteProfiles B3 DNA-binding domain profile. 304 400 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 MobiDBLite consensus disorder prediction 244 264 - -
Cone3ag1121 424 SMART B3_2 6 98 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 SMART B3_2 304 400 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 Gene3D - 281 401 IPR015300 -
Cone3ag1121 424 CDD B3_DNA 4 96 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 PANTHER B3 DOMAIN-CONTAINING 3 385 IPR050655 -
Cone3ag1121 424 CDD B3_DNA 302 398 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 SUPERFAMILY DNA-binding pseudobarrel domain 297 399 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1121 Cone-Chr3:29791630 Cone6ag1316 Cone-Chr6:10578576 1.68E-09 dispersed
Cone3ag1121 Cone-Chr3:29791630 Cone3ag1122 Cone-Chr3:29806884 1.41E-63 tandem
Cone10ag1130 Cone-Chr10:8141996 Cone3ag1121 Cone-Chr3:29791630 3.15E-294 wgd
Cone12ag1121 Cone-Chr12:9050836 Cone3ag1121 Cone-Chr3:29791630 1.06E-129 wgd
Cone3ag1121 Cone-Chr3:29791630 Cone8ag1166 Cone-Chr8:10086216 7.40E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45839 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1121 - - - 0.0