Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1121 ATGCCCCGGCCATGTTTCCACAAGCTTATTATACCATCTACTATCCAGGCTAGGCAATTGAGAATTCCCGAAAACTTTATCAGGAAAATTAGGGATGACCTTTCTGCAGTTGCTAAACTTGCTATCCCAGATGGTCATGTTTGGCATGTTGGGCTGAAGAAACATAATAATAGATATTGCTTTCAAGATGGTTGGTCTGAATTTGTAGACCGTTATTCTATTCGTGTTGGGTACCTCTTAGTGTTCCGATATGAAGGGAATTCAGCTTTTAGTGTTTTTATCTTTAACCTCATTCCTTCCGAAATAAACTATCAATCCGCTGCTCTTACTTGCTCTCAAGGCACCAATTATTACAACCATAATCATGTTTTTGACGAAATGGAAGATGATGACTTAGTTGAACAAATGCCTTCATCAAATCCATCTGCTAATTCCGGTTCTTTGAGAAACAAACTTTTGGGTGAACGAGGAAACCAACTGATTTCCAACAAACTTGGAAATCCTCTACCGCAAAATTTGCTCAATGGATCAAAGCTTAAGAATTGTGTGAATTGGAATGATGAATGGAACTTGCATTTATCTAGGGCGGGTGGTAATAATTTGCCAGCAGATCTACAATCTAGTCGAGAAATTGGTGTTCCATTTAGTGTGACGGATAGTAAAAGATCTGTGGACAAGGTGAGATCGCATGCTCTGGATGATGATTTACGGAAAATCAAATTGAGCGGCAAAAAGAAGCGGAAATTTGCTTCTGATCAAGGGCAACATTCATCTACTCAAAATGAGGAGGAAGGCGATATGGGCTTTAGATTTTACGAAAGTGCTTCTGTTCGAAAGAGAACAGTGACAGCCGAAGAAAGGGAAAGGATTGTTAATGCAGCTAAAACTTTTGAGCCTGCAAATCCTTTTTGCCGGGTTGTTTTGCGACCATCCTATCTCTATAAGGGTTGTATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGCGGGGTTGCCGGATTCATCAAACTTCAGATCTACAATGGAAGGCAGTGGCCCGTCAGATGTCGTTATAATGGTGGAGGGGGAGCTAAATTAAGCCAAGGATGGTATGAATTCTGCCTCGAGAATAATTTAGGGGAAGGAGATGTCTGTGTCTTTGAGTCGCTTCGGACAAGTGAAATTATACTTAAAGTCACAATGTTCCGAGTGTCAGCAGATAATGGACCCATTAACCCGCCTCATCCTTTGCAGCCAAGTGTTGGCCAATTTAGATTGATTAGAAGTTAA 1275 40.55 MPRPCFHKLIIPSTIQARQLRIPENFIRKIRDDLSAVAKLAIPDGHVWHVGLKKHNNRYCFQDGWSEFVDRYSIRVGYLLVFRYEGNSAFSVFIFNLIPSEINYQSAALTCSQGTNYYNHNHVFDEMEDDDLVEQMPSSNPSANSGSLRNKLLGERGNQLISNKLGNPLPQNLLNGSKLKNCVNWNDEWNLHLSRAGGNNLPADLQSSREIGVPFSVTDSKRSVDKVRSHALDDDLRKIKLSGKKKRKFASDQGQHSSTQNEEEGDMGFRFYESASVRKRTVTAEERERIVNAAKTFEPANPFCRVVLRPSYLYKGCIMYLPSCFAEKNLSGVAGFIKLQIYNGRQWPVRCRYNGGGGAKLSQGWYEFCLENNLGEGDVCVFESLRTSEIILKVTMFRVSADNGPINPPHPLQPSVGQFRLIRS 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29791630 29795480 + Conep03aG0162500.1 Cone3ag1121 434580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1121 424 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Cone3ag1121 424 Gene3D - 1 97 IPR015300 -
Cone3ag1121 424 Pfam B3 DNA binding domain 306 399 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 Pfam B3 DNA binding domain 7 93 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 ProSiteProfiles B3 DNA-binding domain profile. 304 400 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 MobiDBLite consensus disorder prediction 244 264 - -
Cone3ag1121 424 SMART B3_2 6 98 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 SMART B3_2 304 400 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 Gene3D - 281 401 IPR015300 -
Cone3ag1121 424 CDD B3_DNA 4 96 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 PANTHER B3 DOMAIN-CONTAINING 3 385 IPR050655 -
Cone3ag1121 424 CDD B3_DNA 302 398 IPR003340 GO:0003677(InterPro)
Cone3ag1121 424 SUPERFAMILY DNA-binding pseudobarrel domain 297 399 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1121 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1121 Cone-Chr3:29791630 Cone6ag1316 Cone-Chr6:10578576 1.68E-09 dispersed
Cone3ag1121 Cone-Chr3:29791630 Cone3ag1122 Cone-Chr3:29806884 1.41E-63 tandem
Cone10ag1130 Cone-Chr10:8141996 Cone3ag1121 Cone-Chr3:29791630 3.15E-294 wgd
Cone12ag1121 Cone-Chr12:9050836 Cone3ag1121 Cone-Chr3:29791630 1.06E-129 wgd
Cone3ag1121 Cone-Chr3:29791630 Cone8ag1166 Cone-Chr8:10086216 7.40E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g506 . . . . . . Bma05g00507 . . . Cma02g00430 Cma20g00883 Car02g00285 Car20g00761 . . . . . . . . . . . . . . . . . Cone12ag1121 Cone8ag1166 Cone3ag1121 . Lsi10g00600 . Chy11g00424 . Blo04g00496 Blo13g00560 . . Bpe15g00884 . Bma03g00530 . Sed01g0327 Cmo02g00432 Cmo20g00891 . . . . . Cpe05g01232 Bhi10g02065 Tan05g1371 Cmetu11g0349 . Hepe08g1052 . . Cla09g01731 Cam09g1826 Cec09g1885 Cco09g1978 . . Cre01g0683 . Csa02g01212 . Cme11g00493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1130 . 230 396 REM Transcription Factor Family AT1G49480 64.1 1.8e-52 203.4
Cone3ag1121 . 257 400 REM Transcription Factor Family AT1G49480 70.8 4.4e-51 198.7
Cone8ag1166 . 150 358 REM Transcription Factor Family AT1G49480 53.3 1.3e-50 197.2
Cone12ag1121 . 197 358 REM Transcription Factor Family AT1G49480 63.0 2.2e-50 196.4
Cone7ag1772 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.5e-312 1068.9
Cone4ag1865 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.7e-311 1065.4
Cone4ag1635 . 1 704 REM Transcription Factor Family AT2G24630 64.7 7.9e-261 897.1
Cone7ag1317 . 1 702 REM Transcription Factor Family AT2G24630 64.1 6.7e-260 894.0
Cone17ag0903 . 1 713 REM Transcription Factor Family AT2G24630 64.5 1.9e-259 892.5
Cone2ag0150 . 6 671 REM Transcription Factor Family AT2G24630 67.2 2.9e-255 878.6
Cone16ag0905 . 6 673 REM Transcription Factor Family AT2G24630 66.4 3.8e-255 878.2
Cone20ag0246 . 1 682 REM Transcription Factor Family AT2G24630 62.0 1.7e-242 836.3
Cone7ag1772 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.5e-312 1068.9
Cone4ag1865 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.7e-311 1065.4
Cone4ag1635 . 1 704 REM Transcription Factor Family AT2G24630 64.7 7.9e-261 897.1
Cone7ag1317 . 1 702 REM Transcription Factor Family AT2G24630 64.1 6.7e-260 894.0
Cone17ag0903 . 1 713 REM Transcription Factor Family AT2G24630 64.5 1.9e-259 892.5
Cone2ag0150 . 6 671 REM Transcription Factor Family AT2G24630 67.2 2.9e-255 878.6
Cone16ag0905 . 6 673 REM Transcription Factor Family AT2G24630 66.4 3.8e-255 878.2
Cone20ag0246 . 1 682 REM Transcription Factor Family AT2G24630 62.0 1.7e-242 836.3
Cone7ag1772 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.5e-312 1068.9
Cone4ag1865 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.7e-311 1065.4
Cone4ag1635 . 1 704 REM Transcription Factor Family AT2G24630 64.7 7.9e-261 897.1
Cone7ag1317 . 1 702 REM Transcription Factor Family AT2G24630 64.1 6.7e-260 894.0
Cone17ag0903 . 1 713 REM Transcription Factor Family AT2G24630 64.5 1.9e-259 892.5
Cone2ag0150 . 6 671 REM Transcription Factor Family AT2G24630 67.2 2.9e-255 878.6
Cone16ag0905 . 6 673 REM Transcription Factor Family AT2G24630 66.4 3.8e-255 878.2
Cone20ag0246 . 1 682 REM Transcription Factor Family AT2G24630 62.0 1.7e-242 836.3
Cone10ag1130 . 230 396 REM Transcription Factor Family AT1G49480 64.1 1.8e-52 203.4
Cone3ag1121 . 257 400 REM Transcription Factor Family AT1G49480 70.8 4.4e-51 198.7
Cone8ag1166 . 150 358 REM Transcription Factor Family AT1G49480 53.3 1.3e-50 197.2
Cone12ag1121 . 197 358 REM Transcription Factor Family AT1G49480 63.0 2.2e-50 196.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004511 1 0 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 6 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45839 None None None None Cone TF