Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1129 ATGCGGTTGCGCGCCGTCGTGATGCCTCGGGCCTCTGATCCACCGTTCCAGTGGTCCCCAACACCATCTCCATCCCCATCTCTCTCACCGTCCACTATCTCTTCCCCTACCTCTTGTCCTTCCTCCACCACAACCACCTCCAGCAGTACTACTTCAAACCACCAGTCAACAATATCACCCCCGTCCAAATCGCCGGTGTACTTCAGTCCGCCGTTGATTGCGATGGTAGTGGTGGTGGCGACGGCGTTCTTGATCGTCACCTACTCTCGCCTAATCTCTCGCCACGTCATCCCGCCAATTCTCCAAATCCTTCGCTATCAGCACCGACGTTGGAAACGGTGGCGCCGCCGCAGACGTGCGCGTTTGTACCTCGCGTCCTCAGCTGGTGACGTCGAGTACATGGAACCTTACGATTCGCCTTTCTTTGAACAGTCCGACGACTTCTCCGTTTTCTCTCCGTACGGACTCGACGAATCAGTCATCAAGACTATTCCGCTCTCCCTCCACACCGCGAAGAATCGGCGAGAGAGCCGTGACTGCGCCGTCTGCCTTCTAGAGTTCGAGGAAGACGACTACATCCGTACGCTTCCGTTCTGTTCTCATAAGTTCCACGTTGATTGCATAGACATATGGCTGAGGTCACACGCAAACTGTCCTCTCTGCCGAGCCGGAATATTCCGACCGGAATCTCCATTCTCTCCGGTGATGGCAGCAAGAATCAGACCGAGCCTGGACGAAACGATCTTACCGAGCATCTTCCTAGAGCCTCTCGCCGAAGCTCCGCTCCAGTCTCATACGACGGTCCTTGAGATCACGCCATGTATCGATGAATCGCGTAATAGCAACTCGGAAGATCGAATTAGCAGACCTGATTTCTTGTTGAAGCGATCGTACTCATTCGGATTCGAACGGAGCTTGGCTTCGGAGCGAATGGTCATGGAACCATCAACAGCGTCCCCTTGGCGATACCGTCGCGGAAGCTTCTGGAGCAAAAGGGCGTCGCCGTTTGGATCGTTACCTAAGGCAAGAGTTTTCTCATTCAGGTACTACAGAGGAACAAAGTCACCGTTCTTAAGACGTAGAGGATTCTTTCCGTTATCGGAATCGAGCGTGAGATTCTCGATGGGCAGCGGCGGCGGAGGAGGAGGATCGTCGCGGCGGAGCAAGTCCATGACGAGCCCGATGTTTCTACGATCATCAGGAGCCGCGGGTTTCTCGTCGAGCCGGCTCAGGTGTGGGGACCCGGAGGCGTTGCTTTCACCGGAACGGTTAAACCGCAGATAG 1284 55.14 MRLRAVVMPRASDPPFQWSPTPSPSPSLSPSTISSPTSCPSSTTTTSSSTTSNHQSTISPPSKSPVYFSPPLIAMVVVVATAFLIVTYSRLISRHVIPPILQILRYQHRRWKRWRRRRRARLYLASSAGDVEYMEPYDSPFFEQSDDFSVFSPYGLDESVIKTIPLSLHTAKNRRESRDCAVCLLEFEEDDYIRTLPFCSHKFHVDCIDIWLRSHANCPLCRAGIFRPESPFSPVMAARIRPSLDETILPSIFLEPLAEAPLQSHTTVLEITPCIDESRNSNSEDRISRPDFLLKRSYSFGFERSLASERMVMEPSTASPWRYRRGSFWSKRASPFGSLPKARVFSFRYYRGTKSPFLRRRGFFPLSESSVRFSMGSGGGGGGSSRRSKSMTSPMFLRSSGAAGFSSSRLRCGDPEALLSPERLNRR 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29898160 29899443 - Conep03aG0163300.1 Cone3ag1129 434588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1129 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 226 IPR013083 -
Cone3ag1129 427 SMART ring_2 180 221 IPR001841 -
Cone3ag1129 427 FunFam RING-H2 finger protein ATL65 149 226 - -
Cone3ag1129 427 CDD RING-H2_EL5-like 179 222 - -
Cone3ag1129 427 Pfam Ring finger domain 179 222 IPR001841 -
Cone3ag1129 427 MobiDBLite consensus disorder prediction 15 29 - -
Cone3ag1129 427 SUPERFAMILY RING/U-box 163 229 - -
Cone3ag1129 427 MobiDBLite consensus disorder prediction 30 62 - -
Cone3ag1129 427 ProSiteProfiles Zinc finger RING-type profile. 180 222 IPR001841 -
Cone3ag1129 427 PANTHER RING-H2 FINGER PROTEIN ATL16 49 246 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cone3ag1129 427 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1129 Cone-Chr3:29898160 Cone7ag0316 Cone-Chr7:1371004 9.46E-23 dispersed
Cone10ag1139 Cone-Chr10:8233819 Cone3ag1129 Cone-Chr3:29898160 7.69E-246 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1129 - - - 0.0