Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1137 ATGGAGGATTGTATTAGTGGCGAAGAGGACTACTATGACTCCGATCAGGACTCGCTCGACGGGCTCGAGAATGATGAGCCTGACGATCAGTTTCTCGCTTCGAAGGGTCCCACGACTAAGATAATTACGAAGGAATCTCTTCTAGCTGCTCAGAGGGAGGATTTACAAAGAGTAATGGAGTTGCTGTCTCTGAGAGAGTACCATGCCCGGACTTTACTGATACATTACCGCTGGGATGTTGAGGCGCTAGTTGCTGTGCTTGTAGATAAGGGAAAGGCTTACTTGTTTTCTGTAGCAGGTGTTATTACTGTGGTTGAGAATCAAAATCTTGACTCTTCAGAAACACCTTCCACGGTGATGTGTGAGATTTGTATAGAGGAAGTACATAGCAAGGAAGCAACAAGAATGGATTGTGGTCACTGCTATTGCAACGACTGTTGGATAGGGCATTTTGTTGTGAAGATAAAGGAAGGCCAAAGTCGGCGTATCAGGTGCATGGCACACAAATGCAATGCTATCTGTGACGAAGCTATTGTTAGAAATCTTGTCAGCAAAAACCATCGTGATCTTGCAGAGAAATTTGATCGTTTTCTTCTTGAGTCATACATTGAAGATAATAAAAGGGTCAAGTGGTGCCCTAGTACTCCTCATTGTGGGAATGCAATACGAGTGGAGGATGATGAATTTTGTGAAATAGAATGCTCTTGTGGCTTGCAGTTTTGTTTTGGTTGCTTATCAGAGGCACACTCCCCATGTACATGCTTGATGTGGGAGCTCTGGACAAAGAAGTGCCGAGATGAATCTGAAACAGTGAATTGGATTACAGTTCATACCAAGCCTTGCCCCAAGTGTCTTAAACCTGTGGAGAAGAATGGTGGCTGCAACCTTGTTAGCTGTATTTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACCGGCAGAGACCATACATGGTCGAGCATTTCTGGTCACAGTTGTGGTCGTTATAAAGAACAATCAGAGAAAAAAGCTGAAAGGGCAAAGAGGGATTTGTACCGATATATGCACTATCATAACCGGTACAAAGCTCATACAGATTCTTTCAAGCTTGAAAGTAAATTGAAGGAGACCATACAAGTGAAGGTGTCTGTTTCTGAAGAGAAGGAATCCACCCTCAGGGATTTCAGCTGGGTAAATAATGGACTCTACAGACTCTTCAGATCAAGGCGGGTTCTTTCATATTCCTACCCATTTGCATTCTATATGTTTGGGGATGATCTTTTCAATGATGAGATGACAAATGAGGAAAGAGAGAATAAATGGCATTTGTTTGAGGACCAGCAACAACAGCTTGAGGCAAATGTTGAGAAGCTATCCAAGTTTCTAGAAGAGCCTTTCGATCAGTATGAAGAAGATAAAGTAAAGGAGATAAGAATGCAAGTCATCAATCTGTCTGCTATTACAGACACCCTTTGTAAGAAAATGTATGATTGCATTGAGAATGATTTATTCGGGTCTCTCCAGCTAGGAATCCACAATATTGCTCCTTACAGGTCGAAGGGAATAGAGCGAGCATTGGAACTTACAGCCGGTTGGGATAATACATCAAATAGTACCGATAAATATCCACAATCGGATTGTGGCACATGTGGTAATGTGAACCTAGTATCTAGTTCTTTAGTAAGCATCAAAGGAGGTTCGTCAGAATGCGATAGACCTTCAGGCTCTGGAAGCTCGGTTGAGATCGGACGGCCTTCTCGAAAGCGGGCCCGGAAGGATGTTGTTGCAGGCAGCCTTTTTGATCTAAACTTGCCGGCAGATCACATAACTGAGAGGAACTGA 1824 43.42 MEDCISGEEDYYDSDQDSLDGLENDEPDDQFLASKGPTTKIITKESLLAAQREDLQRVMELLSLREYHARTLLIHYRWDVEALVAVLVDKGKAYLFSVAGVITVVENQNLDSSETPSTVMCEICIEEVHSKEATRMDCGHCYCNDCWIGHFVVKIKEGQSRRIRCMAHKCNAICDEAIVRNLVSKNHRDLAEKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEIECSCGLQFCFGCLSEAHSPCTCLMWELWTKKCRDESETVNWITVHTKPCPKCLKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEQSEKKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQVKVSVSEEKESTLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGDDLFNDEMTNEERENKWHLFEDQQQQLEANVEKLSKFLEEPFDQYEEDKVKEIRMQVINLSAITDTLCKKMYDCIENDLFGSLQLGIHNIAPYRSKGIERALELTAGWDNTSNSTDKYPQSDCGTCGNVNLVSSSLVSIKGGSSECDRPSGSGSSVEIGRPSRKRARKDVVAGSLFDLNLPADHITERN 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29958169 29963156 - Conep03aG0164100.1 Cone3ag1137 434596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1137 607 MobiDBLite consensus disorder prediction 560 575 - -
Cone3ag1137 607 Pfam IBR domain 274 316 IPR054694 -
Cone3ag1137 607 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 50 84 IPR048962 -
Cone3ag1137 607 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 93 361 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone3ag1137 607 CDD BRcat_RBR_ANKIB1 199 263 - -
Cone3ag1137 607 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 GO:0008270(InterPro)
Cone3ag1137 607 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Cone3ag1137 607 Pfam Ariadne domain 331 603 IPR045840 -
Cone3ag1137 607 SMART ibrneu5 192 254 IPR002867 GO:0008270(InterPro)
Cone3ag1137 607 SMART ibrneu5 262 327 IPR002867 GO:0008270(InterPro)
Cone3ag1137 607 CDD RING-HC_RBR_TRIAD1 119 172 - -
Cone3ag1137 607 FunFam RBR-type E3 ubiquitin transferase 250 498 - -
Cone3ag1137 607 CDD Rcat_RBR_ARI1-like 275 328 - -
Cone3ag1137 607 Gene3D - 250 498 - -
Cone3ag1137 607 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Cone3ag1137 607 SUPERFAMILY RING/U-box 192 260 - -
Cone3ag1137 607 SUPERFAMILY RING/U-box 273 315 - -
Cone3ag1137 607 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 206 IPR013083 -
Cone3ag1137 607 SUPERFAMILY RING/U-box 116 204 - -
Cone3ag1137 607 MobiDBLite consensus disorder prediction 1 25 - -
Cone3ag1137 607 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
Cone3ag1137 607 MobiDBLite consensus disorder prediction 560 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1137 K11968 - - csv:101205066 1002.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0851 Cone-Chr1:54266495 Cone3ag1137 Cone-Chr3:29958169 6.07E-56 dispersed
Cone3ag1137 Cone-Chr3:29958169 Cone5ag0961 Cone-Chr5:4100867 1.58E-53 dispersed
Cone10ag1148 Cone-Chr10:8302117 Cone3ag1137 Cone-Chr3:29958169 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g544 . . . . Bpe07g00414 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1137 Cone10ag1148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1148 . 165 591 ARIADNE family AT4G34370 70.0 7.8e-174 607.4
Cone3ag1137 . 166 605 ARIADNE family AT4G34370 66.7 2.2e-168 589.3
Cone10ag1148 . 59 543 ARIADNE family AT2G16090 74.6 1.5e-213 739.6
Cone3ag1137 . 59 543 ARIADNE family AT2G16090 73.4 5.8e-210 727.6
Cone10ag1148 . 26 546 ARIADNE family AT3G27710 60.0 2.2e-178 622.9
Cone3ag1137 . 26 545 ARIADNE family AT3G27710 59.2 1.4e-175 613.6
Cone10ag1148 . 45 523 ARIADNE family AT3G27720 53.2 2.5e-136 483.0
Cone3ag1137 . 45 524 ARIADNE family AT3G27720 52.3 2.8e-135 479.6
Cone5ag0961 . 65 539 ARIADNE family AT1G05890 72.8 1.3e-219 760.0
Cone1ag0851 . 63 537 ARIADNE family AT1G05890 72.6 4.9e-219 758.1
Cone14ag0574 . 40 512 ARIADNE family AT1G05890 74.0 6.0e-217 751.1
Cone15ag0588 . 1 514 ARIADNE family AT1G05890 64.0 1.2e-209 726.9
Cone1ag0851 . 23 594 ARIADNE family AT1G65430 72.8 1.7e-256 882.5
Cone5ag0961 . 22 596 ARIADNE family AT1G65430 71.9 9.1e-255 876.7
Cone14ag0574 . 7 566 ARIADNE family AT1G65430 69.7 1.1e-239 826.6
Cone15ag0588 . 16 574 ARIADNE family AT1G65430 67.8 1.8e-231 799.3
Cone5ag0961 . 49 458 ARIADNE family AT2G31780 54.9 6.6e-144 508.1
Cone1ag0851 . 47 456 ARIADNE family AT2G31780 54.1 3.6e-142 502.3
Cone14ag0574 . 36 432 ARIADNE family AT2G31780 56.9 5.8e-140 495.0
Cone15ag0588 . 1 439 ARIADNE family AT2G31780 51.9 7.8e-137 484.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46