Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1137 ATGGAGGATTGTATTAGTGGCGAAGAGGACTACTATGACTCCGATCAGGACTCGCTCGACGGGCTCGAGAATGATGAGCCTGACGATCAGTTTCTCGCTTCGAAGGGTCCCACGACTAAGATAATTACGAAGGAATCTCTTCTAGCTGCTCAGAGGGAGGATTTACAAAGAGTAATGGAGTTGCTGTCTCTGAGAGAGTACCATGCCCGGACTTTACTGATACATTACCGCTGGGATGTTGAGGCGCTAGTTGCTGTGCTTGTAGATAAGGGAAAGGCTTACTTGTTTTCTGTAGCAGGTGTTATTACTGTGGTTGAGAATCAAAATCTTGACTCTTCAGAAACACCTTCCACGGTGATGTGTGAGATTTGTATAGAGGAAGTACATAGCAAGGAAGCAACAAGAATGGATTGTGGTCACTGCTATTGCAACGACTGTTGGATAGGGCATTTTGTTGTGAAGATAAAGGAAGGCCAAAGTCGGCGTATCAGGTGCATGGCACACAAATGCAATGCTATCTGTGACGAAGCTATTGTTAGAAATCTTGTCAGCAAAAACCATCGTGATCTTGCAGAGAAATTTGATCGTTTTCTTCTTGAGTCATACATTGAAGATAATAAAAGGGTCAAGTGGTGCCCTAGTACTCCTCATTGTGGGAATGCAATACGAGTGGAGGATGATGAATTTTGTGAAATAGAATGCTCTTGTGGCTTGCAGTTTTGTTTTGGTTGCTTATCAGAGGCACACTCCCCATGTACATGCTTGATGTGGGAGCTCTGGACAAAGAAGTGCCGAGATGAATCTGAAACAGTGAATTGGATTACAGTTCATACCAAGCCTTGCCCCAAGTGTCTTAAACCTGTGGAGAAGAATGGTGGCTGCAACCTTGTTAGCTGTATTTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACCGGCAGAGACCATACATGGTCGAGCATTTCTGGTCACAGTTGTGGTCGTTATAAAGAACAATCAGAGAAAAAAGCTGAAAGGGCAAAGAGGGATTTGTACCGATATATGCACTATCATAACCGGTACAAAGCTCATACAGATTCTTTCAAGCTTGAAAGTAAATTGAAGGAGACCATACAAGTGAAGGTGTCTGTTTCTGAAGAGAAGGAATCCACCCTCAGGGATTTCAGCTGGGTAAATAATGGACTCTACAGACTCTTCAGATCAAGGCGGGTTCTTTCATATTCCTACCCATTTGCATTCTATATGTTTGGGGATGATCTTTTCAATGATGAGATGACAAATGAGGAAAGAGAGAATAAATGGCATTTGTTTGAGGACCAGCAACAACAGCTTGAGGCAAATGTTGAGAAGCTATCCAAGTTTCTAGAAGAGCCTTTCGATCAGTATGAAGAAGATAAAGTAAAGGAGATAAGAATGCAAGTCATCAATCTGTCTGCTATTACAGACACCCTTTGTAAGAAAATGTATGATTGCATTGAGAATGATTTATTCGGGTCTCTCCAGCTAGGAATCCACAATATTGCTCCTTACAGGTCGAAGGGAATAGAGCGAGCATTGGAACTTACAGCCGGTTGGGATAATACATCAAATAGTACCGATAAATATCCACAATCGGATTGTGGCACATGTGGTAATGTGAACCTAGTATCTAGTTCTTTAGTAAGCATCAAAGGAGGTTCGTCAGAATGCGATAGACCTTCAGGCTCTGGAAGCTCGGTTGAGATCGGACGGCCTTCTCGAAAGCGGGCCCGGAAGGATGTTGTTGCAGGCAGCCTTTTTGATCTAAACTTGCCGGCAGATCACATAACTGAGAGGAACTGA 1824 43.42 MEDCISGEEDYYDSDQDSLDGLENDEPDDQFLASKGPTTKIITKESLLAAQREDLQRVMELLSLREYHARTLLIHYRWDVEALVAVLVDKGKAYLFSVAGVITVVENQNLDSSETPSTVMCEICIEEVHSKEATRMDCGHCYCNDCWIGHFVVKIKEGQSRRIRCMAHKCNAICDEAIVRNLVSKNHRDLAEKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEIECSCGLQFCFGCLSEAHSPCTCLMWELWTKKCRDESETVNWITVHTKPCPKCLKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEQSEKKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQVKVSVSEEKESTLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGDDLFNDEMTNEERENKWHLFEDQQQQLEANVEKLSKFLEEPFDQYEEDKVKEIRMQVINLSAITDTLCKKMYDCIENDLFGSLQLGIHNIAPYRSKGIERALELTAGWDNTSNSTDKYPQSDCGTCGNVNLVSSSLVSIKGGSSECDRPSGSGSSVEIGRPSRKRARKDVVAGSLFDLNLPADHITERN 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29958169 29963156 - Conep03aG0164100.1 Cone3ag1137 434596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1137 607 MobiDBLite consensus disorder prediction 560 575 - -
Cone3ag1137 607 Pfam IBR domain 274 316 IPR054694 -
Cone3ag1137 607 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 50 84 IPR048962 -
Cone3ag1137 607 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 93 361 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone3ag1137 607 CDD BRcat_RBR_ANKIB1 199 263 - -
Cone3ag1137 607 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 GO:0008270(InterPro)
Cone3ag1137 607 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Cone3ag1137 607 Pfam Ariadne domain 331 603 IPR045840 -
Cone3ag1137 607 SMART ibrneu5 192 254 IPR002867 GO:0008270(InterPro)
Cone3ag1137 607 SMART ibrneu5 262 327 IPR002867 GO:0008270(InterPro)
Cone3ag1137 607 CDD RING-HC_RBR_TRIAD1 119 172 - -
Cone3ag1137 607 FunFam RBR-type E3 ubiquitin transferase 250 498 - -
Cone3ag1137 607 CDD Rcat_RBR_ARI1-like 275 328 - -
Cone3ag1137 607 Gene3D - 250 498 - -
Cone3ag1137 607 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Cone3ag1137 607 SUPERFAMILY RING/U-box 192 260 - -
Cone3ag1137 607 SUPERFAMILY RING/U-box 273 315 - -
Cone3ag1137 607 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 206 IPR013083 -
Cone3ag1137 607 SUPERFAMILY RING/U-box 116 204 - -
Cone3ag1137 607 MobiDBLite consensus disorder prediction 1 25 - -
Cone3ag1137 607 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
Cone3ag1137 607 MobiDBLite consensus disorder prediction 560 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0851 Cone-Chr1:54266495 Cone3ag1137 Cone-Chr3:29958169 6.07E-56 dispersed
Cone3ag1137 Cone-Chr3:29958169 Cone5ag0961 Cone-Chr5:4100867 1.58E-53 dispersed
Cone10ag1148 Cone-Chr10:8302117 Cone3ag1137 Cone-Chr3:29958169 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1137 K11968 - csv:101205066 1002.28