Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1161 ATGGCGGTCACCGTGAGCCACTCAGACGAGGCTCCACCTGCCAAAGATTCCATTTCTCATAAGCTCGCCGCAAAAACCTCACTATTCGGCTTAAAGCTCTACCTCCTGATTGGAATCTCTATCGCTCTAGCATGTTTAATCGCTGTTTTCCTTCTAATCTTCTTCTGCCTCTTCCGTTCGGATCGGAGAAGCCCGAGAAAGGGTATAAAGCATCGGGCGAGTCAAAGCTGGAGACCGGTTCCGTTATTCTGTAAAGAGATCGAATCTAGTCTTGATCGCACTAACAATGGCGAGAAAGTGGAGGTCAAAATCGGAAGCGTACAGAAGGCGGAGAAGGAAACAGAGGTGGTTGCGATCGAAGGAGGAAGAGAAAAGGGGGAGAGTGACGTGGCAGGTGGAAGTTATACCGACTTGTTGGTGGAGGAGCAGAATATTGGATGGGGTCGGTGGTATAGTTTGAAGGAGCTGGAGGTTGCGACACGTCGGTTTTCGAAAGAGAATGTTATCGGAGAAGGTGGTTATGGAATCGTTTACAGAGGAGTTTTACCAGACGGTTCGGTAGTGGCTGTTAAAAATCTACTTGATAATAACAAGGGTCAGGCAGAGAAAGAGTTCAAGGTAGAAGTGGAAGCCATTGGAAAAGTAAGGCATAAGAACTTGGTTTGTCTACTAGGCTATTGTGCAGAAGGTGCTCAAAGGATGCTTGTGTATGAATTTGTAAACAATGGCAACTTGGAGCAATGGCTGCATGGTGATATAGGTCCTGTTGGTCCTCTAACATGGGACATTCGAATGAGGATTGCTGTTGGAACAGCAAAAGGGATAGCATATTTGCACGAAGGATTAGAACCTAAAGTCGTTCACCGAGACATAAAATCAAGTAACATTCTTCTTGATAAAAAATGGAATGCTAAAGTGTCGGATTTTGGACTCGCTAAGCTCTTAGGAACCGAGGCAAGCTATGTAAACACTCGTGTTATGGGAACATTTGGATATGTCTCTCCAGATTATGCAAGTACAGGTATGCTCAACGAGGCAAATGATGTATACAGCTTCGGAATTCTTCTCATGGAGATTATTACCGGAAGAAGCCCGATAGATTATTCTAGACCTGCTCGAGAGATGAACTTAGTTGATTGGTTTAAAAGCATGGTGGCAAGTAGACGTGGTGAAGAGGTTATAGACCCTCTGATTGAGGCTCAACCCTCTTCAAGAGCTTTGAAACGTACATTGCTAGTTTGTCTTCGCTGTATAGATATGGATCCTCATAAACGGCCAAAAATGGGTCAAATTGTTCATATGCTAGAGGGAGATGATTTCCCATTCCGATCAGAACATAGAAATGTACGGGAAAGAGATTCTCATCATTCTCGAACAGAAATGTCGGACAAAGTTACGATTCCATTGAAGCATGGTGTGGTGGGTGATATAGAGAGATCAGAAAGGAGATGA 1452 44.28 MAVTVSHSDEAPPAKDSISHKLAAKTSLFGLKLYLLIGISIALACLIAVFLLIFFCLFRSDRRSPRKGIKHRASQSWRPVPLFCKEIESSLDRTNNGEKVEVKIGSVQKAEKETEVVAIEGGREKGESDVAGGSYTDLLVEEQNIGWGRWYSLKELEVATRRFSKENVIGEGGYGIVYRGVLPDGSVVAVKNLLDNNKGQAEKEFKVEVEAIGKVRHKNLVCLLGYCAEGAQRMLVYEFVNNGNLEQWLHGDIGPVGPLTWDIRMRIAVGTAKGIAYLHEGLEPKVVHRDIKSSNILLDKKWNAKVSDFGLAKLLGTEASYVNTRVMGTFGYVSPDYASTGMLNEANDVYSFGILLMEIITGRSPIDYSRPAREMNLVDWFKSMVASRRGEEVIDPLIEAQPSSRALKRTLLVCLRCIDMDPHKRPKMGQIVHMLEGDDFPFRSEHRNVRERDSHHSRTEMSDKVTIPLKHGVVGDIERSERR 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30254998 30257640 - Conep03aG0166600.1 Cone3ag1161 434620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1161 483 PANTHER OS01G0323000 PROTEIN 17 460 IPR052232 -
Cone3ag1161 483 FunFam Putative receptor-like serine/threonine-protein kinase 240 450 - -
Cone3ag1161 483 CDD STKc_IRAK 169 437 - -
Cone3ag1161 483 SUPERFAMILY Protein kinase-like (PK-like) 140 436 IPR011009 -
Cone3ag1161 483 SMART serkin_6 163 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1161 483 Gene3D Transferase(Phosphotransferase) domain 1 240 451 - -
Cone3ag1161 483 Gene3D Phosphorylase Kinase; domain 1 138 239 - -
Cone3ag1161 483 ProSiteProfiles Protein kinase domain profile. 163 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1161 483 FunFam Probable serine/threonine-protein kinase At1g01540 143 239 - -
Cone3ag1161 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag1161 483 ProSitePatterns Protein kinases ATP-binding region signature. 169 191 IPR017441 GO:0005524(InterPro)
Cone3ag1161 483 Pfam Protein kinase domain 164 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1161 Cone-Chr3:30254998 Cone4ag1586 Cone-Chr4:12122766 4.81E-175 dispersed
Cone10ag1169 Cone-Chr10:8511197 Cone3ag1161 Cone-Chr3:30254998 0 wgd
Cone12ag1149 Cone-Chr12:9172547 Cone3ag1161 Cone-Chr3:30254998 4.51E-222 wgd
Cone3ag1161 Cone-Chr3:30254998 Cone8ag1197 Cone-Chr8:10205338 5.06E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82696 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1161 - - - 0.0