Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1165 ATGACCGGAGCATCACCCGAAATGTCAAACTTTCTGAACACTGCCGGAAAATGTAGTGACATGACAGTTTTTGAGAGGCAGAGGACAACCCTGAAATGGCAGCAGGAACAAGAACATCTCCTCCACCGTCATGATTACTATAATGGCAATGAATTTGACAGTGTCTTCTACTTGCCAAATAATCCGCGTCGGGTTGATAACTTTGCAGGTCTGGTGGGCTCTAGTTTTGAGTTGGGATATGGGTTGCCTGAATTGGGCAAGTTTGAAATGCACAATTTGAGGTTCCTAAATGAGAATATTATTAATAATTATCCTCAGTGTGAAGTTCCGACAACCTCAACCTCAACTGTAGTTAGCATGGAGAACTCCAAGAAGAGGAAGAGTGATAAAATGCAGAGCACTACTACTAAGGTGTATACTGAGAATGTGAGAAAAGAGAAGAGGATAAAAGGATATGAAGAAGAAGAAGAGTCGAAGATTACAAACCAAAACAGTTGCAGAAACAGAGAAGTTTCTGGTGATGAATCAAAGGAGAATTCGAAGGCGTCCGGGGTTCCAAAGCCGGATTTTATTCATGTTCGGGCTCGAAGGGGTCAAGCCACTGATAGCCACAGTCTAGCTGAGAGAGTAAGGAGAGAGAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGGTGCAACAAGGTCACAGGGAAAGCTGGAATGCTAGACGAAATCATTAACTATGTTCAGTCTCTTCAACAACAAATAGAGTTCTTATCGATGAAATTAGCAATCGTAAATCCAAGTCTAGATTTCAATACGGATTTACTATTTCCCAAAGAGGTGATTCCACTTTGCTCGACTAGTTTTCCATCAGAAACAACTAATCCAGGTTACCTCCAATTCAATCCAACAGACATGGGGACGAGTCTTGACTCACTCTGCTTCACACAAAATCAAACTTATCTGTCAACCTGGAATTCAGACATACAAAGTCTTAACAATATGGGAACAGATCAAAAAACAAGATCAACAACGTTTCCAGCACAGCACCCATATACAGATTCCATTGAGGCAGCCAACGAGCTAAAGATGGGGAGTTGA 1095 41.55 MTGASPEMSNFLNTAGKCSDMTVFERQRTTLKWQQEQEHLLHRHDYYNGNEFDSVFYLPNNPRRVDNFAGLVGSSFELGYGLPELGKFEMHNLRFLNENIINNYPQCEVPTTSTSTVVSMENSKKRKSDKMQSTTTKVYTENVRKEKRIKGYEEEEESKITNQNSCRNREVSGDESKENSKASGVPKPDFIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQQQIEFLSMKLAIVNPSLDFNTDLLFPKEVIPLCSTSFPSETTNPGYLQFNPTDMGTSLDSLCFTQNQTYLSTWNSDIQSLNNMGTDQKTRSTTFPAQHPYTDSIEAANELKMGS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30320347 30322625 + Conep03aG0167000.1 Cone3ag1165 434624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1165 364 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 117 308 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone3ag1165 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 249 IPR011598 GO:0046983(InterPro)
Cone3ag1165 364 CDD bHLH_AtBPE_like 189 274 - -
Cone3ag1165 364 MobiDBLite consensus disorder prediction 150 187 - -
Cone3ag1165 364 FunFam Basic helix-loop-helix transcription factor 196 268 - -
Cone3ag1165 364 Pfam Helix-loop-helix DNA-binding domain 203 250 IPR011598 GO:0046983(InterPro)
Cone3ag1165 364 Gene3D - 196 267 IPR036638 GO:0046983(InterPro)
Cone3ag1165 364 SMART finulus 205 255 IPR011598 GO:0046983(InterPro)
Cone3ag1165 364 MobiDBLite consensus disorder prediction 115 136 - -
Cone3ag1165 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 267 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1165 Cone-Chr3:30320347 Cone6ag0499 Cone-Chr6:2493438 5.34E-43 dispersed
Cone10ag0966 Cone-Chr10:6505449 Cone3ag1165 Cone-Chr3:30320347 2.10E-35 wgd
Cone12ag1155 Cone-Chr12:9213888 Cone3ag1165 Cone-Chr3:30320347 4.12E-86 wgd
Cone3ag1165 Cone-Chr3:30320347 Cone8ag1204 Cone-Chr8:10239336 2.23E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45843 PF00026 Asp 7.60E-124 CL0129 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1165 - - - 0.0