Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1170 ATGGCTGCTTCAACAATGGCTCTCTCTCCCCCTTCTCTTGCCGGCCAAGCCATCAAGTTGGCTCCCACTGTCTCAGACCTTCTCAGAGAAGGTCTATTTGGAAGCCCAAGGTACAGTCCATACCGTGTCAAGTACTTGGGCCCATTCTCAGGCGAGGCCTCATCATACCTTACCGGAGAGTTCCCCGGTGACTACGGTTGGGACACTGTTGGACTCTCGGCTGATCCCAAGACCTTTGCCAAGAACTGTGAGCTCGAGGTTATTCACTCGAGATGGGCCATGCTCGGTGCTTTGGGTTGCGTCTTCCTTGAGCTCTTGGCCCGCAATGGGGTCAAGTTCGGCGAAGCAGTCTGGTTCAAGGCTGGAGCCCAAATATTCAGTGAAGGTAGGCTTGACTACTTGGGAAACCAAAGCTTGATCCATGCTCAAAGCATTTTGGCATTTTGGGAAACCCAAGTCTCTACGTGGTCATATAACGAAATGAGAGCTAGAGATAACCTTGCTAAGTTGATTCCTTATTTTGATTTGCCTATTGGTGAATATTATGAAAACTTTGTTCGAGATTCATATTGTCCTTCCTGTTCACCTCATATTAGTATTGCATTAACATCTGATAATTGGAGTGCAAGGTCTAAGCAAGATTATTTATCTTAA 654 46.94 MAASTMALSPPSLAGQAIKLAPTVSDLLREGLFGSPRYSPYRVKYLGPFSGEASSYLTGEFPGDYGWDTVGLSADPKTFAKNCELEVIHSRWAMLGALGCVFLELLARNGVKFGEAVWFKAGAQIFSEGRLDYLGNQSLIHAQSILAFWETQVSTWSYNEMRARDNLAKLIPYFDLPIGEYYENFVRDSYCPSCSPHISIALTSDNWSARSKQDYLS 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30367837 30369065 + Conep03aG0167500.1 Cone3ag1170 434629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1170 217 FunFam Chlorophyll a-b binding protein, chloroplastic 44 137 - -
Cone3ag1170 217 SUPERFAMILY Chlorophyll a-b binding protein 37 166 - -
Cone3ag1170 217 Gene3D Chlorophyll a/b binding protein domain 44 180 - -
Cone3ag1170 217 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 162 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cone3ag1170 217 Pfam Chlorophyll A-B binding protein 54 155 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1170 Cone-Chr3:30367837 Cone3ag1486 Cone-Chr3:33523763 4.48E-87 dispersed
Cone3ag1170 Cone-Chr3:30367837 Cone9ag0912 Cone-Chr9:4480977 8.19E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1170 K08912 - csv:101213845 249.595