Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1174 ATGCTTCGATGTGCTCATCCCACGGATGCTAAGGTTGAGGGCGTGCTACGGGGGAGTTCAGCCTCATCACCGCAGGCTTGGTCCACAAGCCATGATCGAACCTCAAATGGGCTCCAACCGCCGAAGCTGAGGTCACCCCAGGGCTGGCCCAACAAATATATTATGAAGGCTAACCAGCAGCTGTCTAATCTTAAAGATTCCCACAACATGCTTCCAAACATATTGCCTGAATTTGTTTGTCTGATTGAAGGTTTTGGACGTTCTTTGAGAGGGCTTGTCAAGACACCTTGCAAGATTTCAACCATGAGCGAAACAATGTCTGGACCGCTTGACCGACTGATTAAACATGGACTATCTGATGTTGAAAACGCTGAGGATGAGAGGAAGACAAAGATCGGATCGTTTAGGAAGAAAGCAATCAATGCTTCAACCAAGTTAAGAAACTCCTTGAAGATGAAGGGGAGGAAGAACAGCAGGGTCATGTCACTTGCAATTGAGGATGATATCAATGCAGAGGAATTGCAGGCAGTCGATGCGTTCCGTCAAACTCTTATCTTAGAAGAGCTATTGCCGTTGAAACACGATGATCATCATATGATGCTTAGGTTTTTAAAGGCAAGAAAATTTGATATCGAAAAATCAAAGCAAATGTGGTCCGATATGATCCAGTGGAGGAAGGAGTTCGGGGCCGACACAATCATGGAGGACTTTGATTTCAAGGAAATAGACGAGGTTTTGAAATACTATCCACAAGGACATCATGGAGTCGACAAGGAAGGGAGACCAGTGTACATAGAAAGACTGGGACAAGTCGACCCGACCAAGCTGCTGCAAGTCACGACAATCGACCGGTATGTGAGCTACCATGTCCAGGAATTCGAAAGAACTTTTGCTCTTAAGTTCCCGGCATGTTCTATTTCTGCAAAGAAGCATATCGATCAGAGCACAACCATCTTGGATGTACAAGGAGTGGGTCTGAAAAATTTTACTAAATGTGCAAGGGATCTGATCCAACGGCTTCAGAAAATCGATGGCGATAATTACCCTGAGACCCTGAACCGAATGTTCATCATCAATGCCGGTTCGGGATTCAGGCTTCTGTGGAACACAGTTAAATCATTCCTTGATCCCAAAACCTCAGCCAAAATCCATGTCTTGGGTAACAAGTACCAGATCAAATTGCTTGAAATAATTGATTCTAGTGAGCTACCCGAGTTTCTTGGCGGAACCTGCACTTGCGAGGATAAGGGTGGTTGTATGCGTTCTGATAAGGGACCATGGAATGATCCCGAAATAGTGAAGATGGTTCACAGCGGCGAGGCTAAATGCAGCTGGAGAACTTTGTCCGAAATCGAGGAGAAGATGATTTCTGAAGATGAGGATGCTCTAAATATCTCAAAGAAGACAGAAACAGTTCCTGATCGGGCAGAAAACATAGACCATCATCATAAACTCACTCCTGTTCCGGAAGAAGTTTCCATTAAAAAATGTGACAAAATTATTGACTACAACAAACTCATCCCAATGGTTGTTGACAAGGCCGTTGATCAAGCTTGGGTTAACCCGGCTCAAACTAACAAATTCCCACCCTACAAAGGTACATAA 1605 44.49 MLRCAHPTDAKVEGVLRGSSASSPQAWSTSHDRTSNGLQPPKLRSPQGWPNKYIMKANQQLSNLKDSHNMLPNILPEFVCLIEGFGRSLRGLVKTPCKISTMSETMSGPLDRLIKHGLSDVENAEDERKTKIGSFRKKAINASTKLRNSLKMKGRKNSRVMSLAIEDDINAEELQAVDAFRQTLILEELLPLKHDDHHMMLRFLKARKFDIEKSKQMWSDMIQWRKEFGADTIMEDFDFKEIDEVLKYYPQGHHGVDKEGRPVYIERLGQVDPTKLLQVTTIDRYVSYHVQEFERTFALKFPACSISAKKHIDQSTTILDVQGVGLKNFTKCARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTSAKIHVLGNKYQIKLLEIIDSSELPEFLGGTCTCEDKGGCMRSDKGPWNDPEIVKMVHSGEAKCSWRTLSEIEEKMISEDEDALNISKKTETVPDRAENIDHHHKLTPVPEEVSIKKCDKIIDYNKLIPMVVDKAVDQAWVNPAQTNKFPPYKGT 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30397100 30401049 + Conep03aG0168000.1 Cone3ag1174 434633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1174 534 FunFam SEC14 cytosolic factor 229 441 - -
Cone3ag1174 534 CDD SEC14 242 410 IPR001251 -
Cone3ag1174 534 MobiDBLite consensus disorder prediction 15 49 - -
Cone3ag1174 534 Gene3D - 132 228 - -
Cone3ag1174 534 Pfam CRAL/TRIO domain 247 409 IPR001251 -
Cone3ag1174 534 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 241 415 IPR001251 -
Cone3ag1174 534 SMART sec14_4 241 412 IPR001251 -
Cone3ag1174 534 Pfam CRAL/TRIO, N-terminal domain 190 219 IPR011074 -
Cone3ag1174 534 PRINTS Cellular retinaldehyde-binding protein signature 199 221 - -
Cone3ag1174 534 PRINTS Cellular retinaldehyde-binding protein signature 368 387 - -
Cone3ag1174 534 PRINTS Cellular retinaldehyde-binding protein signature 401 410 - -
Cone3ag1174 534 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 119 463 IPR051026 -
Cone3ag1174 534 SMART CRAL_TRIO_N_2 196 221 IPR011074 -
Cone3ag1174 534 MobiDBLite consensus disorder prediction 18 42 - -
Cone3ag1174 534 SUPERFAMILY CRAL/TRIO domain 241 437 IPR036865 -
Cone3ag1174 534 Gene3D - 229 440 IPR036865 -
Cone3ag1174 534 SUPERFAMILY CRAL/TRIO N-terminal domain 167 237 IPR036273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1174 K26544 - - cit:102612595 623.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0711 Cone-Chr17:4946260 Cone3ag1174 Cone-Chr3:30397100 2.71E-55 dispersed
Cone3ag1174 Cone-Chr3:30397100 Cone8ag1211 Cone-Chr8:10274433 2.25E-175 dispersed
Cone3ag1174 Cone-Chr3:30397100 Cone3ag1175 Cone-Chr3:30402116 8.29E-173 tandem
Cone6ag1253 Cone-Chr6:9985217 Cone3ag1174 Cone-Chr3:30397100 5.61E-160 transposed
Cone10ag0980 Cone-Chr10:6604550 Cone3ag1174 Cone-Chr3:30397100 7.53E-293 wgd
Cone12ag1161 Cone-Chr12:9242558 Cone3ag1174 Cone-Chr3:30397100 3.84E-178 wgd
Cone3ag1174 Cone-Chr3:30397100 Cone8ag1210 Cone-Chr8:10270462 3.17E-201 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40