Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1177 ATGTCATCACTCTCAGTCCCCTTTCTCTCTCCCCCACTCTCCTCTTCCACCTCCACTCACACCAAAACACGGCTCTTTGCCGCCACCACCACCCCTGCCACCGTACCGCCACCCGTGTCCGAGGCGAGGTTGGAGCCGAGAGTTGAGGAGAGAGACGGGTATTGGGTTTTGAAGGAAAAGTTTAGGGAAGGTATAAATCCAGCAGAGAAGATTAAGATTGGGAAAGAACCAATGAAGCTTTTCATGGAAAATGGGATTGAAGAGCTTGCTAACATGTCTATGGAGGAAATTGAAAAGTCTAAGGATAGTAAAGATGATATTGATGTTAGACTCAAATGGCTTGGCCTCTTTCATAGGAGGAAGCATCAATATGGGAGATTTATGATGAGGCTGAAGCTACCAAATGGGGTAACGACAAGCACACAAACAAGATACTTAGCAAACGTGATTAAAAAATATGGGAAAGAGGGCTGTGCCGACGTGACGACAAGGCAAAACTGGCAAATACGAGGTGTCGTATTACCAGATGTATCAGAAATCCTGAAGGGACTTGTGGATGTCGGTTTGACCAGCCTTCAGAGTGGAATGGACAACGTTAGAAATCCTGTCGGAAATCCTCTTGCCGGCGCTGACCCTTTCGAGATCGTCGACACTCGCCCTTATACCAACTTGCTCTCCCATTTTATCACTTCAAATTCATTTGGAAACCCTGCTGTTACTAACCTGCCCAGAAAGTGGAACGTGTGTGTAGTGGGCTCACATGATCTTTTCGAGCATCCCCACATAAACGATCTTGCATACATGCCAGCCCAGAAGGACGGACTTTTCGGGTTCAATTTGTTAGTGGGTGGGTTTTTCAGCCCAAAGAGATGTGCAGAGGCAGTCCCACTTGATGCTTGGGTTCCTGCAGATGACGTCATCCCTGTTTGCAGAGCAGTGCTTGAGGTCTATAGAGACCTTGGTACAAGAGGCAACAGACAAAAAACCAGGATGATGTGGTTAATTGATGAACTTGGAATAGAAGGATTCAGGTCGGAAGTGGTGAAAAGAATGCCCCAAAAGGAGCTAGGGAGAGCATCATCAGAAGACCTAATTCAAAAGCAATGGGAGAGAAGAGATTATCTAGGAGTTCATCCTCAAAAACAAGAAGGGCTTAACTACATAGGCCTTCACATTCCAGTAGGCAGACTCCAAGCAGAAGACATGGATGCTCTAGCCGATCTAGCGGACCAATATGGCACAAGTGAGCTAAGGCTAACTGTAGAGCAAAACATCATAATCCCCAACATACCGGATTCGAAAGTAGAAGCCTTACTTCAAGAGCCTCTCTTGCACCAGAAGTTTTCGCCACAACCACCTATCTTGATGAAGGGTTTGGTTGCTTGCACTGGAAATCAGTTTTGTGGGCAGGCAATCATAGAGACAAAAGCTAGGGCTTTGAAGGTGACTGAAGAGGTGGGAAGAAGAGTGGATGTAAACAAGCCTGTGAGAATGCATTGGACTGGTTGCCCTAATACTTGTGGGCAAGTTCAAGTGGCTGATATTGGGTTCATGGGGTGTATGACTAGAGATGAGAATGGGAAAATTTGTGAAGGGACTGATGTTTTCTTGGGTGGGAGAATTGGGTGTGATTCTCATTTGGGTAATGTTTATAAGAAGGGCGTCCCTTGTGAGGACTTGGTACCCTTAGTTGTGGACATTATTGTTAAACACTTTGGAGGTGTCTTAAGGGAGAGTGAAGAAGGGGATGAAGGTTGA 1758 46.08 MSSLSVPFLSPPLSSSTSTHTKTRLFAATTTPATVPPPVSEARLEPRVEERDGYWVLKEKFREGINPAEKIKIGKEPMKLFMENGIEELANMSMEEIEKSKDSKDDIDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSTQTRYLANVIKKYGKEGCADVTTRQNWQIRGVVLPDVSEILKGLVDVGLTSLQSGMDNVRNPVGNPLAGADPFEIVDTRPYTNLLSHFITSNSFGNPAVTNLPRKWNVCVVGSHDLFEHPHINDLAYMPAQKDGLFGFNLLVGGFFSPKRCAEAVPLDAWVPADDVIPVCRAVLEVYRDLGTRGNRQKTRMMWLIDELGIEGFRSEVVKRMPQKELGRASSEDLIQKQWERRDYLGVHPQKQEGLNYIGLHIPVGRLQAEDMDALADLADQYGTSELRLTVEQNIIIPNIPDSKVEALLQEPLLHQKFSPQPPILMKGLVACTGNQFCGQAIIETKARALKVTEEVGRRVDVNKPVRMHWTGCPNTCGQVQVADIGFMGCMTRDENGKICEGTDVFLGGRIGCDSHLGNVYKKGVPCEDLVPLVVDIIVKHFGGVLRESEEGDEG 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30447805 30450806 - Conep03aG0168300.1 Cone3ag1177 434636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1177 585 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 332 468 IPR036136 GO:0016491(InterPro)
Cone3ag1177 585 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 457 568 IPR045854 -
Cone3ag1177 585 Gene3D - 64 444 - -
Cone3ag1177 585 Gene3D Sulfite Reductase Hemoprotein, domain 1 188 373 IPR045854 -
Cone3ag1177 585 Gene3D Sulfite Reductase Hemoprotein, domain 1 453 583 IPR045854 -
Cone3ag1177 585 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 196 354 IPR045854 -
Cone3ag1177 585 PRINTS Sirohaem Fe-binding site signature 457 475 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Cone3ag1177 585 PRINTS Sirohaem Fe-binding site signature 501 519 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Cone3ag1177 585 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 16 581 IPR051329 -
Cone3ag1177 585 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 44 195 IPR036136 GO:0016491(InterPro)
Cone3ag1177 585 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 120 184 IPR005117 GO:0016491(InterPro)
Cone3ag1177 585 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 378 442 IPR005117 GO:0016491(InterPro)
Cone3ag1177 585 Pfam Nitrite and sulphite reductase 4Fe-4S domain 459 569 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Cone3ag1177 585 MobiDBLite consensus disorder prediction 1 20 - -
Cone3ag1177 585 Pfam Nitrite and sulphite reductase 4Fe-4S domain 196 354 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Cone3ag1177 585 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 501 517 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1177 K00366 - - cit:102616714 945.266
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0984 Cone-Chr10:6648995 Cone3ag1177 Cone-Chr3:30447805 3.95E-50 transposed
Cone10ag0983 Cone-Chr10:6647015 Cone3ag1177 Cone-Chr3:30447805 2.78E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g300 . . . . . Bpe12g00152 . . Cmo19g00823 Cmo11g01791 . . . . . Cpe04g00635 Cpe15g00647 Bhi05g01561 Tan02g0564 . Lac12g0465 Hepe02g0361 . . Cla02g00340 Cam02g0349 Cec02g0350 Cco02g0355 Clacu02g0340 Cmu02g0338 Cre02g0670 Cone12ag1294 . Cone3ag1177 Cone10ag1211 . Csa07g00194 . Cme01g01140 . Blo13g00469 . . . . . Bma08g00714 . . . Cma11g01329 Cma19g00801 Car11g01418 Car19g00619 . . . . . . . . . . . . . . . . Lsi11g01292 Csa02g01292 Chy01g00586 .
Vvi3g409 . Blo15g00744 Bda06g01068 . Bpe07g00380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1177 Cone10ag0984 . . . . . . . . . . . . . . . . . . . Cpe14g00297 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011811 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30