Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1179 ATGGGTCTTATCCCAAATCAAAGAGGCTCGAGAACAGGAGGAGGGACCAGTCACGAAAGCTTACCCGTAATCAACAACAACAATGGCGACGGGGTTTCTCCGGTCGGGACAAAGAAGAAATGGGCGAGCAATCTACTGCCGTTATTCGTCGCTCTTGTCATCATAGCAGAGATTACTTTCCTTGGCCGCCTCGACGTGGGTAAGAACGCCGCTCTCGTCGATACCTTGGCCGACTTGTTCTACAGGTCGGAGGGCGTTGTTGATGATCTGGGCCTTGGAGTTTTGGGTGGTAACAATGATCGGAGTTTTGAATCGGAATTCGAACCGGAATCGGAGAGTTGTGAGGATTGGTTGGAGAAGGTGGATTATGTGGCCTACTCTAGAGACTTCGAAAAGAATCCCATCTTGGTTTCTGGTGATGAAAAGGACTGGAAATCTTGTGACGTGGGATGTGAATTTGATATGAGTACTGGTCAGGATGCTGATGCTGCATTTGGTTTACCTCAAAAACGAGGCAGACCTAGTATTCTCCGATCAATGGAATCTTCCAAGTACTATATAGACAACAATCTTGATTTCGCACGACGAAAGGGTTATAGTATTATAATGACGACAAGTCTGTCTTCGGATGTTCCGGTTGGATATTTTTCTTGGGCTGAGTATGATATTATGGCTCCAGTCCAGCCCAAGACTGAAACCGCCCTTGCAGCTGCTTTCATTTCTAATTGTGTTGCTCGTAATTTTCGCTTGCAAGCTCTTGACGGTCTTGAAAAGTTGAATACCAAGATCGATTCTTATGGTTCTTGCCACAAGAATCATGATGAACAAGTGGACAAAGTGAACACTCTAAAGCGCTACAAATTTAGCCTGGCTTTTGAGAATTCAAATGAAGAGGATTATGTCACCGAAAAATTTTTCCAATCCCTAGTTGCAGGAGCTATTCCCGTTGTAGTTGGTGCTCCAAATATACAAGATTTTGCTCCTTCTCTGGGTTCTCTTTTGCATATTGGGGAGCTTTCAGATGTTGAGTCAGTTGCCAAGTCAATGAAGTATCTTGCTGATAATCCAGATGCATTCAACCAGTCATTGAGGTGGAAATATGAGGGCCCGTCTGATTCTTTCAAGGCACTAGTGGATATGGCATCAGTACACTCATCATGTCGCCTTTGCATTCACTTGGCAACTCAAATCTGGGAGAGAGAAGAAAAGAGACTTGGATTCCAAAAACGCCCTTGCAAGTGCAAAAGAGGCTCGGAAACAGTCTATCACTTGTATGTAAGAGAAAGAGGGATGTTTCACATGGAGTCCATTTTCTTAAGGTCAGGGAATTTGACCTTGGTGGCTTTGGAGATGGAGATCCGCACGAAATTTGGTTCTCGGAAACATAGACCTGTATGGAAAGATGAAAGACCGGAAAGCATTAGAGGAGGGGATGAACTGAAAATATATAAAATATATCCTCTTGGGTTGACACAAAGGCGAGCCCTTTATACCTTCACCTTCAACGTAGATGATTTTACAAGGCATGTGAAAAATAACCCTTGTGCGAAGTTTGAGGTCATTTTCGTCTAA 1572 43.96 MGLIPNQRGSRTGGGTSHESLPVINNNNGDGVSPVGTKKKWASNLLPLFVALVIIAEITFLGRLDVGKNAALVDTLADLFYRSEGVVDDLGLGVLGGNNDRSFESEFEPESESCEDWLEKVDYVAYSRDFEKNPILVSGDEKDWKSCDVGCEFDMSTGQDADAAFGLPQKRGRPSILRSMESSKYYIDNNLDFARRKGYSIIMTTSLSSDVPVGYFSWAEYDIMAPVQPKTETALAAAFISNCVARNFRLQALDGLEKLNTKIDSYGSCHKNHDEQVDKVNTLKRYKFSLAFENSNEEDYVTEKFFQSLVAGAIPVVVGAPNIQDFAPSLGSLLHIGELSDVESVAKSMKYLADNPDAFNQSLRWKYEGPSDSFKALVDMASVHSSCRLCIHLATQIWEREEKRLGFQKRPCKCKRGSETVYHLYVRERGMFHMESIFLRSGNLTLVALEMEIRTKFGSRKHRPVWKDERPESIRGGDELKIYKIYPLGLTQRRALYTFTFNVDDFTRHVKNNPCAKFEVIFV 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30459668 30463807 + Conep03aG0168600.1 Cone3ag1179 434638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1179 523 MobiDBLite consensus disorder prediction 9 29 - -
Cone3ag1179 523 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 232 397 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
Cone3ag1179 523 Gene3D - 179 373 IPR038577 -
Cone3ag1179 523 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 181 373 - -
Cone3ag1179 523 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 126 400 - -
Cone3ag1179 523 MobiDBLite consensus disorder prediction 1 29 - -
Cone3ag1179 523 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 108 496 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1179 K00753 - - gmx:100792811 699.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1085 Cone-Chr12:8882647 Cone3ag1179 Cone-Chr3:30459668 2.05E-252 dispersed
Cone10ag0987 Cone-Chr10:6682381 Cone3ag1179 Cone-Chr3:30459668 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0939 . 92 573 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 8.0e-160 561.2
Cone2ag0834 . 90 573 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 7.5e-150 528.1
Cone16ag0180 . 90 572 Xyloglucan Fucosyltransferase1 AT1G14080 53.0 3.1e-148 522.7
Cone13ag0939 . 95 574 Xyloglucan Fucosyltransferase1 AT1G14100 55.9 5.7e-163 571.6
Cone16ag0180 . 94 572 Xyloglucan Fucosyltransferase1 AT1G14100 57.7 3.1e-161 565.8
Cone2ag0834 . 94 573 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.0e-160 563.1
Cone14ag0976 . 47 542 Xyloglucan Fucosyltransferase1 AT1G14100 50.9 9.4e-142 501.1
Cone15ag0967 . 56 542 Xyloglucan Fucosyltransferase1 AT1G14100 50.6 4.4e-139 492.3
Cone4ag0460 . 46 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.3 2.8e-138 489.6
Cone13ag0939 . 91 575 Xyloglucan Fucosyltransferase1 AT1G14110 50.2 2.9e-137 486.1
Cone2ag0834 . 91 572 Xyloglucan Fucosyltransferase1 AT1G14110 51.3 6.6e-134 474.9
Cone16ag0180 . 91 571 Xyloglucan Fucosyltransferase1 AT1G14110 51.0 8.7e-134 474.6
Cone12ag1085 . 1 520 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 8.9e-193 670.6
Cone3ag1179 . 1 523 Xyloglucan Fucosyltransferase1 AT1G49710 62.3 5.1e-180 628.2
Cone10ag0987 . 1 521 Xyloglucan Fucosyltransferase1 AT1G49710 61.7 5.3e-177 618.2
Cone4ag1204 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 71.8 1.8e-172 602.8
Cone7ag0922 . 1 420 Xyloglucan Fucosyltransferase1 AT1G71990 66.2 3.4e-163 572.0
Cone13ag0939 . 5 572 Xyloglucan Fucosyltransferase1 AT2G03210 56.3 2.4e-186 649.4
Cone2ag0834 . 75 572 Xyloglucan Fucosyltransferase1 AT2G03210 56.1 7.7e-169 591.3
Cone16ag0180 . 100 571 Xyloglucan Fucosyltransferase1 AT2G03210 58.1 2.2e-163 573.2
Cone13ag0938 . 58 480 Xyloglucan Fucosyltransferase1 AT2G03210 52.1 5.7e-140 495.4
Cone15ag0967 . 59 541 Xyloglucan Fucosyltransferase1 AT2G03210 52.2 9.7e-140 494.6
Cone14ag0976 . 47 541 Xyloglucan Fucosyltransferase1 AT2G03210 51.3 5.9e-137 485.3
Cone14ag0975 . 8 330 Xyloglucan Fucosyltransferase1 AT2G03210 52.0 3.9e-96 349.7
Cone13ag0939 . 1 571 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 5.0e-197 684.9
Cone16ag0180 . 32 570 Xyloglucan Fucosyltransferase1 AT2G03220 59.6 4.1e-191 665.2
Cone2ag0834 . 22 571 Xyloglucan Fucosyltransferase1 AT2G03220 58.9 1.2e-190 663.7
Cone13ag0938 . 8 479 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 6.8e-154 541.6
Cone15ag0967 . 1 539 Xyloglucan Fucosyltransferase1 AT2G03220 51.9 4.4e-153 538.9
Cone14ag0976 . 1 538 Xyloglucan Fucosyltransferase1 AT2G03220 50.2 4.1e-151 532.3
Cone14ag0975 . 1 328 Xyloglucan Fucosyltransferase1 AT2G03220 56.2 1.1e-103 374.8
Cone13ag0939 . 103 573 Xyloglucan Fucosyltransferase1 AT2G15350 52.7 1.9e-150 530.0
Cone2ag0834 . 94 572 Xyloglucan Fucosyltransferase1 AT2G15350 51.1 2.4e-145 513.1
Cone16ag0180 . 94 571 Xyloglucan Fucosyltransferase1 AT2G15350 50.9 6.5e-143 505.0
Cone13ag0939 . 103 573 Xyloglucan Fucosyltransferase1 AT2G15370 52.2 2.1e-144 510.0
Cone13ag0939 . 103 573 Xyloglucan Fucosyltransferase1 AT2G15390 52.6 8.8e-151 531.2
Cone2ag0834 . 98 573 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 9.4e-145 511.1
Cone16ag0180 . 98 572 Xyloglucan Fucosyltransferase1 AT2G15390 51.8 2.7e-144 509.6
Cone12ag1085 . 1 520 Xyloglucan Fucosyltransferase1 AT3G19280 64.8 5.7e-192 667.9
Cone3ag1179 . 1 523 Xyloglucan Fucosyltransferase1 AT3G19280 61.6 3.4e-181 632.1
Cone10ag0987 . 1 521 Xyloglucan Fucosyltransferase1 AT3G19280 61.5 3.8e-180 628.6
Cone13ag0939 . 5 572 Xyloglucan Fucosyltransferase1 AT2G03210 56.3 2.4e-186 649.4
Cone2ag0834 . 75 572 Xyloglucan Fucosyltransferase1 AT2G03210 56.1 7.7e-169 591.3
Cone16ag0180 . 100 571 Xyloglucan Fucosyltransferase1 AT2G03210 58.1 2.2e-163 573.2
Cone13ag0938 . 58 480 Xyloglucan Fucosyltransferase1 AT2G03210 52.1 5.7e-140 495.4
Cone15ag0967 . 59 541 Xyloglucan Fucosyltransferase1 AT2G03210 52.2 9.7e-140 494.6
Cone14ag0976 . 47 541 Xyloglucan Fucosyltransferase1 AT2G03210 51.3 5.9e-137 485.3
Cone14ag0975 . 8 330 Xyloglucan Fucosyltransferase1 AT2G03210 52.0 3.9e-96 349.7
Cone13ag0939 . 1 571 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 5.0e-197 684.9
Cone16ag0180 . 32 570 Xyloglucan Fucosyltransferase1 AT2G03220 59.6 4.1e-191 665.2
Cone2ag0834 . 22 571 Xyloglucan Fucosyltransferase1 AT2G03220 58.9 1.2e-190 663.7
Cone13ag0938 . 8 479 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 6.8e-154 541.6
Cone15ag0967 . 1 539 Xyloglucan Fucosyltransferase1 AT2G03220 51.9 4.4e-153 538.9
Cone14ag0976 . 1 538 Xyloglucan Fucosyltransferase1 AT2G03220 50.2 4.1e-151 532.3
Cone14ag0975 . 1 328 Xyloglucan Fucosyltransferase1 AT2G03220 56.2 1.1e-103 374.8
Cone13ag0939 . 5 572 Xyloglucan Fucosyltransferase1 AT2G03210 56.3 2.4e-186 649.4
Cone2ag0834 . 75 572 Xyloglucan Fucosyltransferase1 AT2G03210 56.1 7.7e-169 591.3
Cone16ag0180 . 100 571 Xyloglucan Fucosyltransferase1 AT2G03210 58.1 2.2e-163 573.2
Cone13ag0938 . 58 480 Xyloglucan Fucosyltransferase1 AT2G03210 52.1 5.7e-140 495.4
Cone15ag0967 . 59 541 Xyloglucan Fucosyltransferase1 AT2G03210 52.2 9.7e-140 494.6
Cone14ag0976 . 47 541 Xyloglucan Fucosyltransferase1 AT2G03210 51.3 5.9e-137 485.3
Cone14ag0975 . 8 330 Xyloglucan Fucosyltransferase1 AT2G03210 52.0 3.9e-96 349.7
Cone13ag0939 . 103 573 Xyloglucan Fucosyltransferase1 AT2G15390 52.6 8.8e-151 531.2
Cone2ag0834 . 98 573 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 9.4e-145 511.1
Cone16ag0180 . 98 572 Xyloglucan Fucosyltransferase1 AT2G15390 51.8 2.7e-144 509.6
Cone13ag0939 . 103 573 Xyloglucan Fucosyltransferase1 AT2G15370 52.2 2.1e-144 510.0
Cone13ag0939 . 92 573 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 8.0e-160 561.2
Cone2ag0834 . 90 573 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 7.5e-150 528.1
Cone16ag0180 . 90 572 Xyloglucan Fucosyltransferase1 AT1G14080 53.0 3.1e-148 522.7
Cone13ag0939 . 95 574 Xyloglucan Fucosyltransferase1 AT1G14100 55.9 5.7e-163 571.6
Cone16ag0180 . 94 572 Xyloglucan Fucosyltransferase1 AT1G14100 57.7 3.1e-161 565.8
Cone2ag0834 . 94 573 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.0e-160 563.1
Cone14ag0976 . 47 542 Xyloglucan Fucosyltransferase1 AT1G14100 50.9 9.4e-142 501.1
Cone15ag0967 . 56 542 Xyloglucan Fucosyltransferase1 AT1G14100 50.6 4.4e-139 492.3
Cone4ag0460 . 46 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.3 2.8e-138 489.6
Cone13ag0939 . 91 575 Xyloglucan Fucosyltransferase1 AT1G14110 50.2 2.9e-137 486.1
Cone2ag0834 . 91 572 Xyloglucan Fucosyltransferase1 AT1G14110 51.3 6.6e-134 474.9
Cone16ag0180 . 91 571 Xyloglucan Fucosyltransferase1 AT1G14110 51.0 8.7e-134 474.6
Cone13ag0939 . 103 573 Xyloglucan Fucosyltransferase1 AT2G15350 52.7 1.9e-150 530.0
Cone2ag0834 . 94 572 Xyloglucan Fucosyltransferase1 AT2G15350 51.1 2.4e-145 513.1
Cone16ag0180 . 94 571 Xyloglucan Fucosyltransferase1 AT2G15350 50.9 6.5e-143 505.0
Cone12ag1085 . 1 520 Xyloglucan Fucosyltransferase1 AT3G19280 64.8 5.7e-192 667.9
Cone3ag1179 . 1 523 Xyloglucan Fucosyltransferase1 AT3G19280 61.6 3.4e-181 632.1
Cone10ag0987 . 1 521 Xyloglucan Fucosyltransferase1 AT3G19280 61.5 3.8e-180 628.6
Cone12ag1085 . 1 520 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 8.9e-193 670.6
Cone3ag1179 . 1 523 Xyloglucan Fucosyltransferase1 AT1G49710 62.3 5.1e-180 628.2
Cone10ag0987 . 1 521 Xyloglucan Fucosyltransferase1 AT1G49710 61.7 5.3e-177 618.2
Cone4ag1204 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 71.8 1.8e-172 602.8
Cone7ag0922 . 1 420 Xyloglucan Fucosyltransferase1 AT1G71990 66.2 3.4e-163 572.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70