Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1180 ATGGTCAGAATCCTTACGATGTTTTATCGTGAAGCCAGAGAGAAGTTGCTCTCCCTTTGCTATATCCAGTGGGGACGACGACCCGCTAATTCAACCCTTGTTTTCGATCCCGCATTTCTACTTTCTCTGCTTCTAATTTTCGCAGCAAATCAGCTTCCTGCAGCAATGGCGGGTTGCCCCTTAGATTTAAGTGGATCCAATTTCACCTTAGTCACTTCTACATGCTCTAATGACAATGATAGAGGAAAATGTTGCCGCTATATAAACGCTCTTGTTGCTATATCCATAGCTCGTTATGCAAACTCAACAGGCAACCTAGGAGTCTCTTCAGATTTATCAGACACCTGTCTCCAATTCATATTACAAACTATGAAACTATATGGAGTTCCTCGAAACGCAACTCTTTTTTGTGGTTTCGGCACGAAAATTCCTGTCAACTATGAGTGTAGGGGCCGAACAACTGTCACCCAGATGCTTGAATCTCCTAAGTTTTCGGAAGTTTCTAAAAATTGTCAAGTGCCCCTTTTAGAGGAAAGTAAGTGCAGGAAGTGTTTAAATGCAGGAATTGTATATATTCATCATATAGTGGGAATGGATGATAATATGACTTTGAGTAGTTGTCGGGATGCTACTTTTGCTACACTTGGTAGCCAAGTTGAATTTGCTTCGGCTATTGATATTGCTAGTTGTTTCTTTGGAGTTCGAGGGCTTAACATGACTCCAGAGCAATCACCTTCCTTAGTGACCCCAGAGGCTCCTCCAACTCCATTGACTGCTTCAAGCCCGACACAATTATCATTAGGAATATCCACGAATGAAATCCATCGTTCCTACCACCTCACATTGATTCCAGGTATTGGCATAGGGGTCACAGCAATTGCTGTAATGATGTTCTTGGTCTTGATAATACTAATTCGAAGAAAAAATAAAGAGCTCGAGGACTCTGAAAATACCGATATCGCTTCTTCAAAAAACATTCCTTCTCGCCCCAGAAAACATTTCCAGGAAGGTCCTATTATGTTTAGGAAATTCAGCTACAAGGAGATAAAGAAGGCAACCAAGGATTTTAGTACTGTTATTGGACGTGGAGGATTTGGAACTGTTTATGAAGCTCATTTTAATTATGGAGTAGTGGCTGCTGTGAAGAGGATGAACAAGGTATCAGCACAGGGAGAGGAGGAGTTTTGTAGAGAGATTGAACTTCTTGCTCGGCTTCATCACAGACATCTTGTTTCTCTTCGCGGCTTTTGTGTTGAAAAGCATGAAAGGTTTCTCATGTATGAGTTCATGGCGAAAGGAAGCTTGAAGGATCATCTTCATACTCCCGGCAGAGCTCCTCTAAATTGGCAGGCTAGAATCCAAATAGCAATTGATGTGGCAAATGCTCTGGAATACCTCCATTTTTACTGTGATCCTCCTTTGTGCCACAGGGACATTAAATCCAGCAACATTCTACTAAATGAAAATTTAGTTGCCAAGGTTGCCGATTTTGGGCTTGCACATGCTTCAAAAGATGGTTCTATTTCCTTCGAACCTGTAAACACTGAAGTCCGTGGAACACCAGGCTATATGGACCCAGAATATGTGGTAACTCAAGAACTTACCGAGAAAAGTGATATATACAGCTATGGAGTACTACTATTGGAACTAGTAACTGCAAGAAGAGCAATTCAAGACGGAGAGAATCTAGTTGAATGGTCTCAATTCTACATGTTATCAGAATCCAGTCAACCTGTTATGGTGGACCCAAGCATCAAAGATTCTTTTGACTTGGACCAGCTTCAGACGGTCATGTCAATCGCAAAATGGTGCACCCAGAGAGAAGGCCGGGCAAGACCCTCCGTCAAACAGGTTCTTCGACTTTTGTATGAATGTTCGGACCCTATGATGATGCATAATGGGATTGGGGAAGAAGACTTTGAAGAAGGTGGTGGTGAAGGGAGAGGAAGAATAAGTAAAGGGAAAAGGCATAGAAGTGATGTGGGTTTTCATAGTGGAGAGGGAAAGTATCTTGCTTCGTCTTCGAGTACTTCGAGGTCATATTGTAGTAGAAGCTTCTTGCTCGAAACTGGATCACCTCAATCTCCAAACAACATTTTGTCTCTCTAA 2109 42.06 MVRILTMFYREAREKLLSLCYIQWGRRPANSTLVFDPAFLLSLLLIFAANQLPAAMAGCPLDLSGSNFTLVTSTCSNDNDRGKCCRYINALVAISIARYANSTGNLGVSSDLSDTCLQFILQTMKLYGVPRNATLFCGFGTKIPVNYECRGRTTVTQMLESPKFSEVSKNCQVPLLEESKCRKCLNAGIVYIHHIVGMDDNMTLSSCRDATFATLGSQVEFASAIDIASCFFGVRGLNMTPEQSPSLVTPEAPPTPLTASSPTQLSLGISTNEIHRSYHLTLIPGIGIGVTAIAVMMFLVLIILIRRKNKELEDSENTDIASSKNIPSRPRKHFQEGPIMFRKFSYKEIKKATKDFSTVIGRGGFGTVYEAHFNYGVVAAVKRMNKVSAQGEEEFCREIELLARLHHRHLVSLRGFCVEKHERFLMYEFMAKGSLKDHLHTPGRAPLNWQARIQIAIDVANALEYLHFYCDPPLCHRDIKSSNILLNENLVAKVADFGLAHASKDGSISFEPVNTEVRGTPGYMDPEYVVTQELTEKSDIYSYGVLLLELVTARRAIQDGENLVEWSQFYMLSESSQPVMVDPSIKDSFDLDQLQTVMSIAKWCTQREGRARPSVKQVLRLLYECSDPMMMHNGIGEEDFEEGGGEGRGRISKGKRHRSDVGFHSGEGKYLASSSSTSRSYCSRSFLLETGSPQSPNNILSL 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30464253 30469036 - Conep03aG0168700.1 Cone3ag1180 434639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1180 702 FunFam Putative receptor-like protein kinase 323 429 - -
Cone3ag1180 702 CDD STKc_IRAK 360 622 - -
Cone3ag1180 702 FunFam Putative receptor-like protein kinase 430 630 - -
Cone3ag1180 702 Gene3D Phosphorylase Kinase; domain 1 317 429 - -
Cone3ag1180 702 ProSiteProfiles Protein kinase domain profile. 354 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1180 702 MobiDBLite consensus disorder prediction 634 679 - -
Cone3ag1180 702 PANTHER OS01G0750732 PROTEIN 156 639 IPR050885 -
Cone3ag1180 702 MobiDBLite consensus disorder prediction 242 263 - -
Cone3ag1180 702 Pfam SPARK 57 207 IPR043891 -
Cone3ag1180 702 SUPERFAMILY Protein kinase-like (PK-like) 335 625 IPR011009 -
Cone3ag1180 702 Pfam Protein kinase domain 358 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1180 702 MobiDBLite consensus disorder prediction 634 650 - -
Cone3ag1180 702 SMART serkin_6 354 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1180 702 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524(InterPro)
Cone3ag1180 702 Gene3D Transferase(Phosphotransferase) domain 1 430 636 - -
Cone3ag1180 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1180 Cone-Chr3:30464253 Cone13ag1294 Cone-Chr13:9676434 1.36E-67 dispersed
Cone18ag0160 Cone-Chr18:838292 Cone3ag1180 Cone-Chr3:30464253 2.87E-55 transposed
Cone6ag0311 Cone-Chr6:1438284 Cone3ag1180 Cone-Chr3:30464253 1.85E-59 transposed
Cone10ag0989 Cone-Chr10:6688146 Cone3ag1180 Cone-Chr3:30464253 4.00E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82697 PF12165 Alfin 2.50E-68 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1180 - - - 0.0