Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1181 ATGGAGAGGATACTATTGGTTGTAAAACTACTATCCTTAACTTTCCTCTTCCATTTTTCTTCAGCACTTAAGGCTGGACAAACATGCGCAGTAGATAGCAACTGTGATGCAGGGCTGCATTGCGAACCCTGTTTAGCAAATGGAAATGGACGGCCAAGATGTACTCGAATCCGACCACTAAGTCCAATTTCACAGGTGAAAACGCTGCCGTTTAATCGGTACAGTTGGCTGACTACACACAATGCGTTTGCGAGGTTGGGAGAGAGATCAGCAACCGGTTCTATTGTTTTGGCTCCTACTAATCAGCAGGACTCCATTACTAGCCAGCTCAATAATGGAGTAAGAGCACTGATGCTTGATCTGTATGACTTTGAAAATGATGTCTGGTTATGTCACTCCTTTGGTGGGCAATGCTACAACTACACCTCTTTCCAACCTGCCATCAATGTTCTTAAGGAGATCCGAGCATTTCTTGGAGCGAACCCTTCCGAGATTGTAACAATTATAATTGAAGACTATGTGACATCACCTAAGGGGTTGACTAAAGTGTTTGATGCAGCTGGTCTTAGAACATTTTGGTTTCCCATTTCTAGAATGCCCAAGAACGGAGGAAACTGGCCAACCATTTCTGATATGATTCAGAAAAATCAGCGCTTAGTTGTTTTCACTTCAAAAGCATCAAAGGAAGCTTCCGAAGGGATCGCGTATCAATGGAGGTACATGGTCGAAAACCAATATGGGGATGGGGGGATGAAGGCCGGCTTATGTCCAAATCGAGCAGAGTCGCCTACAATGAACACAACTTCAAGATCACTAGTTTTAGTAAACTATTTCCGTAGTACTCCAAGATTTGAAATGGCTTGTAAAGATAACTCGGCCCCGTTACTTGGCATGGTGAATACTTGTTACGGTGGGGCTGGAAAACGTTGGCCTAATTTCATCGCTGTTGATTTCTACAAGAGGAGTGATGGTGGGGGAGCCCCAGAAGCTGTTGATATAACAAACGGCCGCTTAATCTGTGGGTGTCAAAGCATTTCCTATTGCAAGGAAAATGGCACATTTGGAGATTGTGAGCTACCTGAGGCTGCTGGTCCGGCAGCAACCCAGACTGGGTTTGCTTATTCATATCGAGGAAGCCCGGTTCAATTGTGGCACTTGATTGGAACTTTGGTAGCAGCCATTCTCTTCTTATGGTGA 1197 44.7 MERILLVVKLLSLTFLFHFSSALKAGQTCAVDSNCDAGLHCEPCLANGNGRPRCTRIRPLSPISQVKTLPFNRYSWLTTHNAFARLGERSATGSIVLAPTNQQDSITSQLNNGVRALMLDLYDFENDVWLCHSFGGQCYNYTSFQPAINVLKEIRAFLGANPSEIVTIIIEDYVTSPKGLTKVFDAAGLRTFWFPISRMPKNGGNWPTISDMIQKNQRLVVFTSKASKEASEGIAYQWRYMVENQYGDGGMKAGLCPNRAESPTMNTTSRSLVLVNYFRSTPRFEMACKDNSAPLLGMVNTCYGGAGKRWPNFIAVDFYKRSDGGGAPEAVDITNGRLICGCQSISYCKENGTFGDCELPEAAGPAATQTGFAYSYRGSPVQLWHLIGTLVAAILFLW 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30475236 30479204 + Conep03aG0168800.1 Cone3ag1181 434640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1181 398 SUPERFAMILY PLC-like phosphodiesterases 68 336 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Cone3ag1181 398 PANTHER UNCHARACTERIZED 34 349 IPR051057 GO:0008081(PANTHER)
Cone3ag1181 398 CDD PI-PLCc_At5g67130_like 69 335 - -
Cone3ag1181 398 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 70 178 - -
Cone3ag1181 398 Gene3D Phosphatidylinositol (PI) phosphodiesterase 60 326 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1181 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0992 Cone-Chr10:6720565 Cone3ag1181 Cone-Chr3:30475236 4.19E-117 dispersed
Cone10ag1153 Cone-Chr10:8354005 Cone3ag1181 Cone-Chr3:30475236 1.15E-64 dispersed
Cone12ag0127 Cone-Chr12:669008 Cone3ag1181 Cone-Chr3:30475236 3.04E-185 dispersed
Cone12ag1083 Cone-Chr12:8876049 Cone3ag1181 Cone-Chr3:30475236 1.36E-98 dispersed
Cone12ag1084 Cone-Chr12:8878209 Cone3ag1181 Cone-Chr3:30475236 1.70E-102 dispersed
Cone3ag1144 Cone-Chr3:30001617 Cone3ag1181 Cone-Chr3:30475236 4.51E-163 dispersed
Cone3ag1181 Cone-Chr3:30475236 Cone6ag1402 Cone-Chr6:11270648 3.06E-186 dispersed
Cone3ag1181 Cone-Chr3:30475236 Cone3ag1182 Cone-Chr3:30480472 2.51E-102 tandem
Cone2ag0491 Cone-Chr2:2668528 Cone3ag1181 Cone-Chr3:30475236 7.01E-140 transposed
Cone10ag0990 Cone-Chr10:6708714 Cone3ag1181 Cone-Chr3:30475236 6.35E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g394 . Blo15g00750 Bda06g01073 . Bpe07g00375 . . Bma12g00441 . . Cma02g00450 . Car02g00306 . . . . . . . . . . . . . . . . . . Cone12ag1084 . Cone3ag1181 Cone10ag0992 Lsi10g00528 . . . . . . . . . . . . Cmo02g00459 . . . . . Cpe14g00291 Cpe01g00437 . . . . . . . . . . . . . . . . . Cme11g00541
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002524 2 2 2 1 2 1 3 1 1 1 1 2 2 2 2 4 2 5 3 2 2 2 2 2 1 1 1 3 1 3 59