Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag1183 | ATGCCTGTGAGTTTAGAACCGTTGGATTTAGTAGGCGTACAGATTCCTTACCATTTCAGGTGTCCGATCTCTCTCGAGCTAATGCGCGATCCCGTAACTGTCTCTACCGGTCAAACCTACGACCGTTCAAGTATTGAGTCATGGGTCGCCACCGGAAATACAACGTGTCCAGTCACGCGGGTCCCACTCTCCGACTTCGCTCTCATCCCAAATCACACTCTTCGCAGGCTGATCCAAGACTGGTGTGTCGCTAACCGTTCTTTTGGCGTCGAACGTATTCCGACGCCTAAACAGCCTGCGGATCCCGGTTCGGTCCGGACTTTAATGGCCCAGGTTTCGTCCCGGTCCAACCCGGCCCACTCGCGTCTCTCCGCTCTGCGTCAACTCAGAGGACTCGCTCGTGACTCGGACAAGAATCGTTCTGTTATCTCCTCGCATAATGTGACGGAGATGCTCATCGATATCATCTTCCAGAATTCCGATTCGTCCGAGTTGACTCACGAAGCCCAAGCGGTTCTGGTCATGTTTCAACTCACTGAGTCCGACTGCGAATCGGTCGTATCTGAGCCTCACAGAATCGCTTACCTCTCGCATCTGCTTTTCAATTCTTCGATCGACGTGCGAGTCAACTCCGCCGCACTCGTCGAGCTCGTAATAGCCGGAACACGGTCACCGGAGCTCCGAGCCAAAATCAGCAGTGTAAATGAGATATTCGAAGGTGTAATCGAAATATTGAGAAATCCAATCGCGTATCCACGCGGGCTGAAGATCGGGATCAAGGCGCTGTTCGCTTTGTGTTTGGTGAAGCAGACGAGGCATAAGGCGGTTTCAGCCGGAGCAGCCGATACTTTAATCGACAGACTGGCGGATTTCGAGAAATGTGATGCTGAAAGAGCGCTAGCGACGATAGAGCTCATCTGTAGGATTCCATCCGGAGTGGCGGCGTTTGCGGCGCACGCTCTGACCGTGCCGCTGCTAGTGAAAGTGATCTTGAAGATCTCGAATCGTGCAACAGAGTACGCGGCTAGGGCTCTGCTTTCGATCTGCTCGACGTCGGAGCAGTGCCAGAGAGACGCCGTGGCAGCGGGGATATTAACTCAGTTACTGCTTTTGGTACAGAGCGACTGCACGGAACGAGCTAAGAGTAAGGCGCAGTTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTGAAGATTCGTTTGGAAATTCAGACGATTTCGCTTGCAGTGAGATCGTACTACAGTTCTGA | 1248 | 52.88 | MPVSLEPLDLVGVQIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRVPLSDFALIPNHTLRRLIQDWCVANRSFGVERIPTPKQPADPGSVRTLMAQVSSRSNPAHSRLSALRQLRGLARDSDKNRSVISSHNVTEMLIDIIFQNSDSSELTHEAQAVLVMFQLTESDCESVVSEPHRIAYLSHLLFNSSIDVRVNSAALVELVIAGTRSPELRAKISSVNEIFEGVIEILRNPIAYPRGLKIGIKALFALCLVKQTRHKAVSAGAADTLIDRLADFEKCDAERALATIELICRIPSGVAAFAAHALTVPLLVKVILKISNRATEYAARALLSICSTSEQCQRDAVAAGILTQLLLLVQSDCTERAKSKAQLLLKLLRDSWPEDSFGNSDDFACSEIVLQF | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30496195 | 30497717 | + | Conep03aG0169000.1 | Cone3ag1183 | 434642 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag1183 | 415 | Gene3D | - | 85 | 252 | IPR011989 | - | |
Cone3ag1183 | 415 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 84 | IPR013083 | - | |
Cone3ag1183 | 415 | Gene3D | - | 255 | 392 | IPR011989 | - | |
Cone3ag1183 | 415 | SUPERFAMILY | RING/U-box | 6 | 89 | - | - | |
Cone3ag1183 | 415 | SUPERFAMILY | ARM repeat | 117 | 392 | IPR016024 | - | |
Cone3ag1183 | 415 | SMART | Ubox_2 | 18 | 81 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone3ag1183 | 415 | PANTHER | WDSAM1 PROTEIN | 13 | 397 | IPR045185 | GO:0061630(InterPro) | |
Cone3ag1183 | 415 | Pfam | U-box domain | 15 | 86 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone3ag1183 | 415 | CDD | RING-Ubox_PUB | 16 | 68 | IPR045210 | - | |
Cone3ag1183 | 415 | ProSiteProfiles | U-box domain profile. | 14 | 88 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone3ag1183 | 415 | FunFam | U-box domain-containing protein 31 | 14 | 88 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0896 | Cone-Chr17:7048897 | Cone3ag1183 | Cone-Chr3:30496195 | 6.05E-39 | dispersed | |
Cone20ag0239 | Cone-Chr20:1039077 | Cone3ag1183 | Cone-Chr3:30496195 | 3.07E-38 | dispersed | |
Cone3ag1183 | Cone-Chr3:30496195 | Cone8ag1127 | Cone-Chr8:9943296 | 5.05E-228 | dispersed | |
Cone17ag1116 | Cone-Chr17:8285695 | Cone3ag1183 | Cone-Chr3:30496195 | 1.55E-17 | transposed | |
Cone10ag0996 | Cone-Chr10:6791780 | Cone3ag1183 | Cone-Chr3:30496195 | 8.70E-277 | wgd | |
Cone3ag1183 | Cone-Chr3:30496195 | Cone4ag1974 | Cone-Chr4:13862254 | 3.97E-15 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag1183 | - | - | - | 0.0 |