Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1183 ATGCCTGTGAGTTTAGAACCGTTGGATTTAGTAGGCGTACAGATTCCTTACCATTTCAGGTGTCCGATCTCTCTCGAGCTAATGCGCGATCCCGTAACTGTCTCTACCGGTCAAACCTACGACCGTTCAAGTATTGAGTCATGGGTCGCCACCGGAAATACAACGTGTCCAGTCACGCGGGTCCCACTCTCCGACTTCGCTCTCATCCCAAATCACACTCTTCGCAGGCTGATCCAAGACTGGTGTGTCGCTAACCGTTCTTTTGGCGTCGAACGTATTCCGACGCCTAAACAGCCTGCGGATCCCGGTTCGGTCCGGACTTTAATGGCCCAGGTTTCGTCCCGGTCCAACCCGGCCCACTCGCGTCTCTCCGCTCTGCGTCAACTCAGAGGACTCGCTCGTGACTCGGACAAGAATCGTTCTGTTATCTCCTCGCATAATGTGACGGAGATGCTCATCGATATCATCTTCCAGAATTCCGATTCGTCCGAGTTGACTCACGAAGCCCAAGCGGTTCTGGTCATGTTTCAACTCACTGAGTCCGACTGCGAATCGGTCGTATCTGAGCCTCACAGAATCGCTTACCTCTCGCATCTGCTTTTCAATTCTTCGATCGACGTGCGAGTCAACTCCGCCGCACTCGTCGAGCTCGTAATAGCCGGAACACGGTCACCGGAGCTCCGAGCCAAAATCAGCAGTGTAAATGAGATATTCGAAGGTGTAATCGAAATATTGAGAAATCCAATCGCGTATCCACGCGGGCTGAAGATCGGGATCAAGGCGCTGTTCGCTTTGTGTTTGGTGAAGCAGACGAGGCATAAGGCGGTTTCAGCCGGAGCAGCCGATACTTTAATCGACAGACTGGCGGATTTCGAGAAATGTGATGCTGAAAGAGCGCTAGCGACGATAGAGCTCATCTGTAGGATTCCATCCGGAGTGGCGGCGTTTGCGGCGCACGCTCTGACCGTGCCGCTGCTAGTGAAAGTGATCTTGAAGATCTCGAATCGTGCAACAGAGTACGCGGCTAGGGCTCTGCTTTCGATCTGCTCGACGTCGGAGCAGTGCCAGAGAGACGCCGTGGCAGCGGGGATATTAACTCAGTTACTGCTTTTGGTACAGAGCGACTGCACGGAACGAGCTAAGAGTAAGGCGCAGTTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTGAAGATTCGTTTGGAAATTCAGACGATTTCGCTTGCAGTGAGATCGTACTACAGTTCTGA 1248 52.88 MPVSLEPLDLVGVQIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRVPLSDFALIPNHTLRRLIQDWCVANRSFGVERIPTPKQPADPGSVRTLMAQVSSRSNPAHSRLSALRQLRGLARDSDKNRSVISSHNVTEMLIDIIFQNSDSSELTHEAQAVLVMFQLTESDCESVVSEPHRIAYLSHLLFNSSIDVRVNSAALVELVIAGTRSPELRAKISSVNEIFEGVIEILRNPIAYPRGLKIGIKALFALCLVKQTRHKAVSAGAADTLIDRLADFEKCDAERALATIELICRIPSGVAAFAAHALTVPLLVKVILKISNRATEYAARALLSICSTSEQCQRDAVAAGILTQLLLLVQSDCTERAKSKAQLLLKLLRDSWPEDSFGNSDDFACSEIVLQF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30496195 30497717 + Conep03aG0169000.1 Cone3ag1183 434642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1183 415 Gene3D - 85 252 IPR011989 -
Cone3ag1183 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 84 IPR013083 -
Cone3ag1183 415 Gene3D - 255 392 IPR011989 -
Cone3ag1183 415 SUPERFAMILY RING/U-box 6 89 - -
Cone3ag1183 415 SUPERFAMILY ARM repeat 117 392 IPR016024 -
Cone3ag1183 415 SMART Ubox_2 18 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone3ag1183 415 PANTHER WDSAM1 PROTEIN 13 397 IPR045185 GO:0061630(InterPro)
Cone3ag1183 415 Pfam U-box domain 15 86 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone3ag1183 415 CDD RING-Ubox_PUB 16 68 IPR045210 -
Cone3ag1183 415 ProSiteProfiles U-box domain profile. 14 88 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone3ag1183 415 FunFam U-box domain-containing protein 31 14 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0896 Cone-Chr17:7048897 Cone3ag1183 Cone-Chr3:30496195 6.05E-39 dispersed
Cone20ag0239 Cone-Chr20:1039077 Cone3ag1183 Cone-Chr3:30496195 3.07E-38 dispersed
Cone3ag1183 Cone-Chr3:30496195 Cone8ag1127 Cone-Chr8:9943296 5.05E-228 dispersed
Cone17ag1116 Cone-Chr17:8285695 Cone3ag1183 Cone-Chr3:30496195 1.55E-17 transposed
Cone10ag0996 Cone-Chr10:6791780 Cone3ag1183 Cone-Chr3:30496195 8.70E-277 wgd
Cone3ag1183 Cone-Chr3:30496195 Cone4ag1974 Cone-Chr4:13862254 3.97E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1183 - - - 0.0