Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1184 ATGCAAGGGGAAAGCAGCACAATGGATTCATTCCCCGAAAGTGCAGATATTGGGCAGGGATCGATTTCCAATAGCAATATGATGCCTACAGAAAGTAATATGTTACATCCTATAGAAAGTCGGTTGTCAAATTCTATGATGCCTTCTGGTGAAACAATGCACATAAGTTCTACTATTCACGATGCTCATAACTGTAATGGCTGGAGTTCTGGTGGAAATAGTTCTGGGTTTAACCTACAAAATGAGTTCAATGATGATAGAATGAAAATGGATGTCTGGTCTTCTCCATTCAGTATCCATCCTGGCAGTGGTGCCAGATCAGTCGAAAAGCATTTTGAGCCAACCAATAATCATTTACCTTGGGGAGGTGATATTGGTTCTAGTCATAATGAGGTTAGAAATGGGTTCTCATTTTTACGAGGTTCAAGTTCTAATAGTATCCCTCAAAGTGGGAATCTAAATGCTGAACATGAGGGAAGTAGTGTTAATGGAAGGCAGGGTATGGGAGCTGTTGTAGGCTCTAATCTCACCATGTCAAGTGGATTTGATATAGAGCAAACGTCTTCTGCTGATGCTTTGTCTGATAAAACTGCAACGTCATCCGGAAGTGGTGATTATATGGAGGAAAATGATGGTGGGTCTAGCTCATCTGTGCGAATATGGGGTATATCCTGCAAGAGAAAGGCTCTTGAAGGAACTTCCAGACCTTTTCCTGGTGAAAGTTTAATTTCCTTCCCACAACCAGAAACTGGCTGGCATGCTGGTACTTCTACCTATGGTCAAAGCAGTTTAAGTTTGTCAACGCCTGCACGTGCATCTCCTCCTTTGGGTTCTCCAGAGTCGCATAACGCTTGGGTTGGTGCTGGTAGGAGGGCACTAACTTATGATTCCTTTCCATCTTCAAGTGTTACAGAAAATTTAGAAAGTCCTTTGACAAATTTGGGAAGGAGAGCAACTGCATGGACTCCACAAGACTCAGTGCCATTCCATTTATTACCAGCAGGAAGCTCCGGGCACCCAAATATTTACCCCACTCATCAACTATCTTCCCTTAGTCCTTTTACTGATTCCGCAGACCTAAGGACAACAGCAACTTTGGCTGCCAATTTCAGAGCTCCTCAGGGTCAGTCTCATACTATGCAAACTCCTGGTTCTTCGAGGAGCATTGATCTTTTTCCCTGGGTATGGGCTTCCACTTCAAGACTGGGAAGTTTATCTAATTCTTCTTTTCACGGGGAAAGCAGCTCTGCAGTTCAAGAAGATTTGAATCTACAGAGCAGTACAAGGTACAGTGGTGCAAATCCCACATTTTTACCTGGTCCTGAAATGAGAAATTCATCTCAAGATCCCACAACTTGGAATTTAGGAACTGGAATCACGAGCACTTCCGGTGTTCCATCAACTGTTCATGTTGGCCCTCTACCAAGCATTCATTCTTTCCCAAATCCTGCACATACTCCTTCCCACAATCGCCCAACAGAAAACCAGCAAAGAGTTCCAGAATTTACACCCTGGTCTTTGTTTCCAAATGCTACCTCTGAATCTGGAACCCATGCTGGTCATTTTTCTTCTTCACCTTCAGGTTTTCCATTCCAGGACCACACAGCAATGTTGAATGGACCTAATCGCCGGGGGCATCATCAACCACATTCTAGGTCACCTTCTTTTCTTGAGAGACTTGGCAACAATGCTCTTGGGACTCCTCATTCGTTGCGAGCATTAGCTGATGACATGGAAGGCAGGCGACGGCTAATAACTGAGATTCGTCAAGTCTTGAGTGCCATGCGCAGGAATGACTTCCGTGTTGAGGATCATATGCTATTTGACCCATTCATAGTTCATCCTATGCCCGAAGTACATGACAGGCACAGGGACATGCGCCTTGACGTTGATAACATGTCTTATGAGGAACTATTGGCATTGGAAGAACGAATGGGACATGTTAGCACCGGGTTAGGAGAGGCAGCCATTATGAAGTTTATGAAACAGAGAAAATATGCATCAATGATATCAAAATCTCCCCTGGATATGGAACCATGTTGTGTCTGTCAGGAGCACTATGCTGATGGAGATGATATGGGGACACTCGATTGTGGGCACGACTTCCATACCAATTGCATCAAGCAGTGGGTGTTGCAGAAGAATCTCTGTCCCATTTGTAAAACGACAGCATTGAGGACAGAGAAGGAAGATAAGTGA 2199 44.16 MQGESSTMDSFPESADIGQGSISNSNMMPTESNMLHPIESRLSNSMMPSGETMHISSTIHDAHNCNGWSSGGNSSGFNLQNEFNDDRMKMDVWSSPFSIHPGSGARSVEKHFEPTNNHLPWGGDIGSSHNEVRNGFSFLRGSSSNSIPQSGNLNAEHEGSSVNGRQGMGAVVGSNLTMSSGFDIEQTSSADALSDKTATSSGSGDYMEENDGGSSSSVRIWGISCKRKALEGTSRPFPGESLISFPQPETGWHAGTSTYGQSSLSLSTPARASPPLGSPESHNAWVGAGRRALTYDSFPSSSVTENLESPLTNLGRRATAWTPQDSVPFHLLPAGSSGHPNIYPTHQLSSLSPFTDSADLRTTATLAANFRAPQGQSHTMQTPGSSRSIDLFPWVWASTSRLGSLSNSSFHGESSSAVQEDLNLQSSTRYSGANPTFLPGPEMRNSSQDPTTWNLGTGITSTSGVPSTVHVGPLPSIHSFPNPAHTPSHNRPTENQQRVPEFTPWSLFPNATSESGTHAGHFSSSPSGFPFQDHTAMLNGPNRRGHHQPHSRSPSFLERLGNNALGTPHSLRALADDMEGRRRLITEIRQVLSAMRRNDFRVEDHMLFDPFIVHPMPEVHDRHRDMRLDVDNMSYEELLALEERMGHVSTGLGEAAIMKFMKQRKYASMISKSPLDMEPCCVCQEHYADGDDMGTLDCGHDFHTNCIKQWVLQKNLCPICKTTALRTEKEDK 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30512251 30520477 - Conep03aG0169100.1 Cone3ag1184 434643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1184 732 MobiDBLite consensus disorder prediction 236 282 - -
Cone3ag1184 732 Pfam Ring finger domain 680 721 IPR001841 -
Cone3ag1184 732 SUPERFAMILY RING/U-box 679 724 - -
Cone3ag1184 732 MobiDBLite consensus disorder prediction 250 274 - -
Cone3ag1184 732 FunFam E3 ubiquitin-protein ligase MBR2 647 725 - -
Cone3ag1184 732 MobiDBLite consensus disorder prediction 481 496 - -
Cone3ag1184 732 MobiDBLite consensus disorder prediction 514 532 - -
Cone3ag1184 732 MobiDBLite consensus disorder prediction 428 469 - -
Cone3ag1184 732 MobiDBLite consensus disorder prediction 428 496 - -
Cone3ag1184 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 725 IPR013083 -
Cone3ag1184 732 MobiDBLite consensus disorder prediction 514 564 - -
Cone3ag1184 732 ProSiteProfiles Zinc finger RING-type profile. 680 721 IPR001841 -
Cone3ag1184 732 SMART ring_2 680 720 IPR001841 -
Cone3ag1184 732 MobiDBLite consensus disorder prediction 136 168 - -
Cone3ag1184 732 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 223 725 IPR045191 GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone3ag1184 732 MobiDBLite consensus disorder prediction 1 32 - -
Cone3ag1184 732 MobiDBLite consensus disorder prediction 187 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1184 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1031 Cone-Chr15:8566639 Cone3ag1184 Cone-Chr3:30512251 3.51E-31 dispersed
Cone17ag0852 Cone-Chr17:6762013 Cone3ag1184 Cone-Chr3:30512251 3.86E-56 dispersed
Cone20ag0198 Cone-Chr20:851450 Cone3ag1184 Cone-Chr3:30512251 5.98E-62 dispersed
Cone3ag1184 Cone-Chr3:30512251 Cone4ag1588 Cone-Chr4:12129337 7.87E-81 dispersed
Cone10ag0997 Cone-Chr10:6797150 Cone3ag1184 Cone-Chr3:30512251 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g391 Blo02g00829 Blo15g00751 . . . . . Bma12g00439 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1184 Cone10ag0997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015397 4 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 11