Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1190 ATGGGTCGCTCACTCCTATTGGCCACTCTTTTCCCTCTCCTCTCCATCTTGCTTCTCTCAGATGTGCAATCAACTTCCTTCAAGATAGTGAACAGGTGTCGGCGAACTATATGGCCCGGTTTTCTTTCCGGCGCTGGAACACCTCAGCTTCCAACCACCGGCTTCGCTCTTAAACCGCGGAAGTCCAAAACCATCTATATCCCCAAATCTTGGTCCGGCCGATTATGGGGTCGGAGTCTTTGCTCTGAAGACGCCTCCGGGAAATTTTCTTGTCTCACCGCCGACTGCGGCTCCGGCAAGTTAGAGTGCTCCGGAGGTGGCGCTAAGCCGCCCGCCACATTGGCTGAGTTCACTCTAAACGGCGCCGACGGCTTAGATTTTTACGACGTGAGCCTAGTCGATGGGTACAATCTCCCTATGCTGATCGTGCCGAAGGGAGGCATTAGTGGTGGATGTGGGGCCACGGGTTGCTTAGTGGACTTGAACGGGATTTGTCCGAGAGATCTTAGGGTGGCGCGTGTAAGTGACCGCGAGGTCGTGGCTTGTAGGAGTGCGTGTGAGGCGTTTGGGGACCCGCAGTATTGTTGTAGTGGAGCGTATTCTACGCCAGACACGTGTCCGCCGAATTTATATGCGCAGTTCTTTAAACATGCATGCCCACGCTCGTATAGCTACGCGTATGATGACAAGACCAGCACCTTCACGTGCGCCAACGCCGATTATATAATCATATTTTGTCCCCTCCCTTATACCAGTCAAAAAGTTCTGAGTGCTCGAAAAGATGGAGCAGGACTACCGCTTGTGAACAAGACTATGATGTATCTTCATTAG 831 52.47 MGRSLLLATLFPLLSILLLSDVQSTSFKIVNRCRRTIWPGFLSGAGTPQLPTTGFALKPRKSKTIYIPKSWSGRLWGRSLCSEDASGKFSCLTADCGSGKLECSGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVPKGGISGGCGATGCLVDLNGICPRDLRVARVSDREVVACRSACEAFGDPQYCCSGAYSTPDTCPPNLYAQFFKHACPRSYSYAYDDKTSTFTCANADYIIIFCPLPYTSQKVLSARKDGAGLPLVNKTMMYLH 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30563508 30566914 - Conep03aG0169700.1 Cone3ag1190 434649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1190 276 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cone3ag1190 276 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cone3ag1190 276 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cone3ag1190 276 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cone3ag1190 276 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cone3ag1190 276 PIRSF PR5 1 270 IPR001938 -
Cone3ag1190 276 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Cone3ag1190 276 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Cone3ag1190 276 PANTHER OS03G0233200 PROTEIN 15 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cone3ag1190 276 CDD TLP-PA 26 246 - -
Cone3ag1190 276 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Cone3ag1190 276 Pfam Thaumatin family 31 247 IPR001938 -
Cone3ag1190 276 SMART tha2 27 247 IPR001938 -
Cone3ag1190 276 Gene3D Thaumatin 25 247 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1410 Cone-Chr17:9689129 Cone3ag1190 Cone-Chr3:30563508 3.76E-120 dispersed
Cone20ag0072 Cone-Chr20:349185 Cone3ag1190 Cone-Chr3:30563508 9.76E-116 dispersed
Cone3ag1190 Cone-Chr3:30563508 Cone4ag1978 Cone-Chr4:13879218 7.64E-120 dispersed
Cone3ag1189 Cone-Chr3:30555498 Cone3ag1190 Cone-Chr3:30563508 9.63E-91 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1190 - - - 0.0