Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1212 ATGGATCATACTCTATTTGTTTTTGCTATGCTCTTTCTTAGTCTTCTCCTCTGCCAATCTTACTTTCTTCTTGCCAGTACCACTCTTTCAACCAAGGTTCATATTGTATACATGGGAGATAGGAACCTTGGTGATGAGCTTGAGCAAGTTGAAGATTCTCATAGTGAGATTCTATCAAAGATTCTTGGAAACAAAGAAATTGCCAAGGAATCAATTCTATACAGTTACAAGCATGGCTTTTCGGGATTTGCTGCCGTTTTAACCGATGCTCAAGCCAAGCTTATTGCAGATTTCCCAGGAGTTGTTAGTGTAGTTCCAAACAAGATTCTTAGTATCCACACTACTAGAAGTTGGGATTTTCTTCAAGTAAATCCTCAAATAAAAAATGGAATTTCTTGCAAAGGTCGATCAGGAACCGGTTCTATTATCGGCATTCTAGATACTGGAATTTGGCCAGAATCAGAGAGCTTCAATGATGCCGGTATGGGAGATTATCCATCTCATTGGAGAGGGATATGTCAAGCAGGTGAACAATTCAATCATACCCATTGTAACCGGAAAATAATCGGTGCCCGTTGGTATATAAAAGGTTACGAGGCGGAATTCGGGAAGCTAGATAAAAGTGAAGTAGTTGAATTTGTCTCTGCCCGAGATGCTGCGGGTCACGGAACCCACACATCCTCCACAGCAAGTGGAGCCATTGTAGAAAATGCAAGCTTTATGGGACTAGCTCAAGGGTCGGTTCGAGGTGGAGCACCATTGTCTTGGTTGGCTATATACAAGGTTTGTTGGGCTACGGGTGGGTGCAGCTCGGCCGATCTGCTTGCTGCTTTTGATGATGCAATTTTTGACGGTGTAGATGTGCTTTCTGCATCTCTAGGGTCCACACCACCACTTCCTTCTTATGTCGATGATGTCTTATCGATAGGCTCATTCCATGCTGTTGCTAAGGGAATCTCTGTTATATGCTCGGCCGGAAATACTGGGCCTTATACTCAAACAGTTATAAATACCGCTCCGTGGATTATAACTGTTGCAGCAAGTACAATTGATAGAGCTTTCCCCATCAAGATCACTTTGGGAAACAACCAAACATTTGTGGGTCAGGCTTTGTATACAGGGATGAGAGTGAACAACTTCTATCCTATTGTGAATGGAGAAGACATCCCATCTAGTAAATCTGATGAAGACAGCGCAAGTGGTTGTAATCCCGGAAGCTTAAATGCTACACTAGCAAAAGGAAAAGTGGTTCTTTGTTTTCAATCTCTATCACAAAGGTCAGCTACAACTGCTGGAAGAACGGTCGTAGACGTTCAAGGTGTAGGTCTAATTTTCGCACAGGCACCCACCACGGATGTTGTCTTATCTCGGGGGGTTCCACATGTCCAAGTCGACTTTACAATCGGGACATCTATTCTCACATACATGGTCGCGACCCGAAATCCCGTGGTCAAGTTTAGCATAGCAAAAACAACATTGGGAAAACGGATCTCCCCGGAAATAGCCTTCTTTTCATCCCGAGGCCCGAGTTCCCTTTCTCCCTCTGTCTTGAAGCCTGATATTGCTGCTCCTGGTGTCAATATATTAGCCTCTTGGTCCCCGGCATCTCCTGTACCCCAACCCGACCTATCACAAAATCATCCACCTCAATTTAAATTCAAACTCGAATCTGGAACATCAATGGCGTGTCCTCATGTAACCGGTATTGTAGCTCTTATCAAAACTATACATCCTTCTTGGAGTCCAGCTGCAATCAAATCCGCCCTTATCACAACAGCTTCTCTATATGATGAATTCGATCAAAACATTGTCACTGAAGGGGCTACTCGCAAACAGGCTGACGCTTTTGACTATGGAGGTGGTCATGTTGATGCTAACAAAGCTATAGATCCAGGTCTCGTATATGACATGGGGATTTCAGATTATGTTCTTTTTCTTTGTTCTATGGGATATAATGATAGTGCAATTAACATGGTGACTAAAACTCGTATACAATGCGCCAAGTTACCAAAATTTTATCATCACAATCTCAATCTTCCCTCCATTACCATTCCGGCACTAAAGAACAAATTAAGTGTTTCAAGAACGGTTACAAATGTGGGCCCTGCAAACTCAATCTATGTCGCTCGAGTTGAAACTCCGGCCGACGTAATGGTTAATGTCGAGCCGTGGATTCTAATGTTCAATTCGTCAAAAATGAAGTTAAAGTTTAAGGTGAGTTTTTATTCTTTGGTAAGAGTTCAAGGGAGATACTCATTTGGAAATCTCTTTTGGGAAGATGGTGTTCATGTTGTGAGGATACCACTTATAGTTAAGACTGTCATTGATGACTTTTATCCAAAAACTTAA 2349 42.44 MDHTLFVFAMLFLSLLLCQSYFLLASTTLSTKVHIVYMGDRNLGDELEQVEDSHSEILSKILGNKEIAKESILYSYKHGFSGFAAVLTDAQAKLIADFPGVVSVVPNKILSIHTTRSWDFLQVNPQIKNGISCKGRSGTGSIIGILDTGIWPESESFNDAGMGDYPSHWRGICQAGEQFNHTHCNRKIIGARWYIKGYEAEFGKLDKSEVVEFVSARDAAGHGTHTSSTASGAIVENASFMGLAQGSVRGGAPLSWLAIYKVCWATGGCSSADLLAAFDDAIFDGVDVLSASLGSTPPLPSYVDDVLSIGSFHAVAKGISVICSAGNTGPYTQTVINTAPWIITVAASTIDRAFPIKITLGNNQTFVGQALYTGMRVNNFYPIVNGEDIPSSKSDEDSASGCNPGSLNATLAKGKVVLCFQSLSQRSATTAGRTVVDVQGVGLIFAQAPTTDVVLSRGVPHVQVDFTIGTSILTYMVATRNPVVKFSIAKTTLGKRISPEIAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPASPVPQPDLSQNHPPQFKFKLESGTSMACPHVTGIVALIKTIHPSWSPAAIKSALITTASLYDEFDQNIVTEGATRKQADAFDYGGGHVDANKAIDPGLVYDMGISDYVLFLCSMGYNDSAINMVTKTRIQCAKLPKFYHHNLNLPSITIPALKNKLSVSRTVTNVGPANSIYVARVETPADVMVNVEPWILMFNSSKMKLKFKVSFYSLVRVQGRYSFGNLFWEDGVHVVRIPLIVKTVIDDFYPKT 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30841286 30845084 - Conep03aG0171900.1 Cone3ag1212 434671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1212 782 Gene3D Peptidase S8/S53 domain 141 642 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cone3ag1212 782 Gene3D - 646 775 - -
Cone3ag1212 782 FunFam Subtilisin-like protease SBT1.5 646 774 - -
Cone3ag1212 782 Pfam Peptidase inhibitor I9 33 113 IPR010259 -
Cone3ag1212 782 ProSiteProfiles Serine proteases, subtilase domain profile. 117 629 - -
Cone3ag1212 782 PRINTS Subtilisin serine protease family (S8) signature 557 573 IPR015500 -
Cone3ag1212 782 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
Cone3ag1212 782 PRINTS Subtilisin serine protease family (S8) signature 218 231 IPR015500 -
Cone3ag1212 782 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 113 IPR037045 -
Cone3ag1212 782 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 34 768 IPR045051 -
Cone3ag1212 782 FunFam Subtilisin-like protease SBT5.3 23 113 - -
Cone3ag1212 782 ProSitePatterns Serine proteases, subtilase family, serine active site. 558 568 IPR023828 -
Cone3ag1212 782 Pfam Subtilase family 138 605 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cone3ag1212 782 FunFam subtilisin-like protease SBT1.5 351 493 - -
Cone3ag1212 782 Pfam Fibronectin type-III domain 676 771 IPR041469 -
Cone3ag1212 782 Gene3D - 351 493 - -
Cone3ag1212 782 FunFam Subtilisin-like protease SBT1.5 140 360 - -
Cone3ag1212 782 SUPERFAMILY Subtilisin-like 22 694 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cone3ag1212 782 CDD Peptidases_S8_3 112 594 IPR034197 -
Cone3ag1212 782 CDD PA_subtilisin_like 358 485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1212 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0992 Cone-Chr11:7955867 Cone3ag1212 Cone-Chr3:30841286 6.48E-165 dispersed
Cone3ag1212 Cone-Chr3:30841286 Cone3ag1270 Cone-Chr3:31530079 9.01E-184 dispersed
Cone1ag0378 Cone-Chr1:3222659 Cone3ag1212 Cone-Chr3:30841286 5.76E-201 transposed
Cone3ag1212 Cone-Chr3:30841286 Cone4ag1998 Cone-Chr4:13960673 4.64E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g27 . . . Bda08g00958 . . Bma05g00427 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1212 . . . . . . . . . . Bpe05g00320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001239 3 1 3 3 2 1 1 1 1 1 1 1 2 1 1 4 1 1 2 1 1 2 2 5 9 1 5 5 5 6 73