Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1218 ATGAAGATCCGATGCGACATGTGTAATAAAGCAGAGGCCTCTGTTTTCTGCTCCGGAGACGAGGCTGCTCTCTGTGACGAATGCGATCGCCATGTCCACCATGCTAACAAGCTTGCCACCAAGCACAACCGTTTCTCTCTCCTCCACCCTTCTTTCAAAGAAATCCCTCTTTGCGATATATGTCGGGAGGGGAGGGCCTTCTTATTCTGTCAAGAAGATAGGGCAATTCTATGTGGAGATTGTGACATTCAAATCCACAAAGCAAACGAACAAACACAGAAGCACAGCAGGTTTGTTCTCACGGGAGTGAAGTTCTCTTCCCCTTCTTCCTTATATCTGACTACTATTAACTCTACAACGACAACAACTTCCTCTTCAAATGGCGGCTCGGAGCCTGCGGCCATTATTAATGATGGAAAAACTACTAGAAGCTTGTCTACAGCGTCGAATAAGAGACCGAAAACAACAGGAGATTGCTGTAATAGTAATACAAGTAATTATAATGAAGAGAGTCAGGTAAGCAATAGCGGATCGTATTCAACGAGCAGCATATCGGAGTATTTGGAGACATTGCCCGGTTGGTGCGTGGAAGACTTTCTTGATCCTTCTTATTCCTCTGCTACTAATTATGGCCATTCCCTCTAA 645 44.81 MKIRCDMCNKAEASVFCSGDEAALCDECDRHVHHANKLATKHNRFSLLHPSFKEIPLCDICREGRAFLFCQEDRAILCGDCDIQIHKANEQTQKHSRFVLTGVKFSSPSSLYLTTINSTTTTTSSSNGGSEPAAIINDGKTTRSLSTASNKRPKTTGDCCNSNTSNYNEESQVSNSGSYSTSSISEYLETLPGWCVEDFLDPSYSSATNYGHSL 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30922973 30923893 - Conep03aG0172500.1 Cone3ag1218 434677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1218 214 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone3ag1218 214 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cone3ag1218 214 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Cone3ag1218 214 Gene3D Classic Zinc Finger 1 96 - -
Cone3ag1218 214 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cone3ag1218 214 MobiDBLite consensus disorder prediction 120 179 - -
Cone3ag1218 214 FunFam B-box zinc finger protein 21 1 98 - -
Cone3ag1218 214 CDD Bbox1_BBX-like 57 100 IPR049808 -
Cone3ag1218 214 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 204 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone3ag1218 214 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Cone3ag1218 214 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Cone3ag1218 214 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1218 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1378 Cone-Chr17:9569772 Cone3ag1218 Cone-Chr3:30922973 1.99E-53 dispersed
Cone20ag0105 Cone-Chr20:463874 Cone3ag1218 Cone-Chr3:30922973 2.91E-58 dispersed
Cone3ag1218 Cone-Chr3:30922973 Cone4ag1948 Cone-Chr4:13737676 7.71E-58 dispersed
Cone10ag1103 Cone-Chr10:7787512 Cone3ag1218 Cone-Chr3:30922973 7.13E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag0338 . 10 383 C2C2-CO-like Transcription Factor Family AT5G15850 51.8 5.1e-54 209.1
Cone11ag0338 . 1 383 C2C2-CO-like Transcription Factor Family AT3G02380 52.7 1.9e-61 233.8
Cone7ag1644 . 1 323 C2C2-CO-like Transcription Factor Family AT5G24930 55.9 3.1e-67 253.1
Cone4ag1724 . 1 321 C2C2-CO-like Transcription Factor Family AT5G24930 57.1 7.7e-66 248.4
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 57.5 1.2e-93 340.9
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 1.6e-90 330.5
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone3ag1218 . 1 213 C2C2-CO-like Transcription Factor Family AT1G75540 50.5 3.3e-47 186.4
Cone6ag1668 . 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 64.4 7.0e-57 217.6
Cone9ag1590 . 10 187 C2C2-CO-like Transcription Factor Family AT2G21320 63.5 9.4e-54 207.2
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT2G21320 77.5 5.9e-40 161.4
Cone6ag1668 . 1 175 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 1.1e-55 213.8
Cone9ag1590 . 10 185 C2C2-CO-like Transcription Factor Family AT4G38960 63.1 2.4e-55 212.6
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT4G38960 76.5 1.3e-40 163.7
Cone3ag1218 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 8.3e-48 188.0
Cone10ag1103 . 1 118 C2C2-CO-like Transcription Factor Family AT4G39070 76.3 1.1e-47 187.6
Cone4ag1948 . 1 195 C2C2-CO-like Transcription Factor Family AT4G39070 51.7 1.2e-46 184.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45846 PF05653 Mg_trans_NIPA 3.50E-119 CL0184 Cone TF