Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag1218 | ATGAAGATCCGATGCGACATGTGTAATAAAGCAGAGGCCTCTGTTTTCTGCTCCGGAGACGAGGCTGCTCTCTGTGACGAATGCGATCGCCATGTCCACCATGCTAACAAGCTTGCCACCAAGCACAACCGTTTCTCTCTCCTCCACCCTTCTTTCAAAGAAATCCCTCTTTGCGATATATGTCGGGAGGGGAGGGCCTTCTTATTCTGTCAAGAAGATAGGGCAATTCTATGTGGAGATTGTGACATTCAAATCCACAAAGCAAACGAACAAACACAGAAGCACAGCAGGTTTGTTCTCACGGGAGTGAAGTTCTCTTCCCCTTCTTCCTTATATCTGACTACTATTAACTCTACAACGACAACAACTTCCTCTTCAAATGGCGGCTCGGAGCCTGCGGCCATTATTAATGATGGAAAAACTACTAGAAGCTTGTCTACAGCGTCGAATAAGAGACCGAAAACAACAGGAGATTGCTGTAATAGTAATACAAGTAATTATAATGAAGAGAGTCAGGTAAGCAATAGCGGATCGTATTCAACGAGCAGCATATCGGAGTATTTGGAGACATTGCCCGGTTGGTGCGTGGAAGACTTTCTTGATCCTTCTTATTCCTCTGCTACTAATTATGGCCATTCCCTCTAA | 645 | 44.81 | MKIRCDMCNKAEASVFCSGDEAALCDECDRHVHHANKLATKHNRFSLLHPSFKEIPLCDICREGRAFLFCQEDRAILCGDCDIQIHKANEQTQKHSRFVLTGVKFSSPSSLYLTTINSTTTTTSSSNGGSEPAAIINDGKTTRSLSTASNKRPKTTGDCCNSNTSNYNEESQVSNSGSYSTSSISEYLETLPGWCVEDFLDPSYSSATNYGHSL | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 30922973 | 30923893 | - | Conep03aG0172500.1 | Cone3ag1218 | 434677 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag1218 | 214 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Cone3ag1218 | 214 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Cone3ag1218 | 214 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270(InterPro) | |
| Cone3ag1218 | 214 | Gene3D | Classic Zinc Finger | 1 | 96 | - | - | |
| Cone3ag1218 | 214 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
| Cone3ag1218 | 214 | MobiDBLite | consensus disorder prediction | 120 | 179 | - | - | |
| Cone3ag1218 | 214 | FunFam | B-box zinc finger protein 21 | 1 | 98 | - | - | |
| Cone3ag1218 | 214 | CDD | Bbox1_BBX-like | 57 | 100 | IPR049808 | - | |
| Cone3ag1218 | 214 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 204 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
| Cone3ag1218 | 214 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270(InterPro) | |
| Cone3ag1218 | 214 | Pfam | B-box zinc finger | 3 | 45 | IPR000315 | GO:0008270(InterPro) | |
| Cone3ag1218 | 214 | Pfam | B-box zinc finger | 56 | 96 | IPR000315 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag1378 | Cone-Chr17:9569772 | Cone3ag1218 | Cone-Chr3:30922973 | 1.99E-53 | dispersed | |
| Cone20ag0105 | Cone-Chr20:463874 | Cone3ag1218 | Cone-Chr3:30922973 | 2.91E-58 | dispersed | |
| Cone3ag1218 | Cone-Chr3:30922973 | Cone4ag1948 | Cone-Chr4:13737676 | 7.71E-58 | dispersed | |
| Cone10ag1103 | Cone-Chr10:7787512 | Cone3ag1218 | Cone-Chr3:30922973 | 7.13E-94 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45846 | PF05653 | Mg_trans_NIPA | 3.50E-119 | CL0184 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag1218 | - | - | - | 0.0 |