Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag1220 | ATGGCGTCCGATTCTTCTCAGCCTAGAAATGACAGAACTTCATCACCGGACGACTCATTGTCGAGTCCAATTGGAAACACTGCGTCGTCTCCAGGGAACGCATCCCGTGGAAGAAAGCGGCGCGGACATACTACTACCTCGGCCTTTGCAACTACACCGCCTCACCGCTCTCGACTTTCCTCCTCAGAAACAACTCCGACTCCTCGAACTGGAAGAAATGGTGGACGAAGATCTTTCGTAACAACACCCATGGCAACCTCTCCTCCGTCCACTGACGATGTTCCTCTCTCCTCTGAAGGCGGCGACGACTTTGACATGGATGAGGACCGTCCGACCTTTGTATGGGGAACAAATATAAGCGTGGATGATGTCAAGGGGGCGATTGATCGGTTTTTGAAGTATTTTCGACGTCACAGAGGGGCACAATCGGAGGGGGATTTGCATATTGAAGGGAAGTACATGGAGGCGATCAGGGAGGTTCTTGAAAAGGAAGGAGATTCACTTGATATAGATGCAAACGATGTGTTCGATTATGATTCAGATTTGTATACGAAGATGGTTAGGTATCCGCTCGAGGTCCTTGCGATTTTTGATATTGTTCTGATGGAAATGGTTCCCAGAATCAATGAATTATTTGAGAAGAATATTCAGACTCGAATATTCAATCTCAAGACCTCAACTTCGATGAGAAATCTAAATCCTTCTGACATTGAGAGGATGGTATCATTGAAAGGGATGGTTATCCGGTGTAGCTCGATAATACCAGAGATTAGGGAAGCACTATTCAGGTGTCTAGTCTGTGGATATTACTCCGACCCCATTCCTATAGAGAGAGGACGAATTATTGAGCCTAAAGGATGTCTGAAGGAAGAGTGTCTGGCCAAGAACTCCATGACACTAGTTCACAACCGATGTAGATTTGCTGATAAGCAGATTGTGAAACTTCAAGAAACTCCTGATGAGATTCCTGAAGGAGGAACACCTCACACTGTGAGCTTGCTGATGCATGATAAGCTGGTTGATGCTGGAAAGCCAGGTGACCGAATTGAGGTTACTGGGATTTATCGGGCCATGAGTGTCAGAGTTGGACCAACACAGAGAACGGTAAAATCATTATTCAAGACTTACATCGATTGTCTTCATATAAAAAAGACTGAAAAGTCGAGGATGATGGCCGAGGATCCCATGGAAATTGAGTTTAGCCAGGGCAGAAATGTGAACGATGTCCCTTTTGATGCAGAAACAGTGAATAAGCTGAAAGAACTATCAAAACAACCAGACATTTATGAGAGATTAACCAAGTCACTGGCTCCTAATATCTGGGAGCTAGATGATATTAAGAAGGGCCTTCTCTGCCAGCTTTTTGGTGGAAATGCATTGAAGTTGGAATCTGGTGCTACCTACCGTGGTGATATTAACATTCTTCTTGTCGGTGATCCTGGAACTAGCAAGTCTCAGCTTCTACAATACATTCACAAGTTATCTCCTCGTGGCATTTACACTAGTGGCCGGGGGAGCTCTGCTGTTGGGTTGACTGCCTACGTTACCAAGGATCCTGAGACAGGGCAAACTGTTCTGGAGAGTGGAGCCTTAGTTCTAAGTGATAGAGGCATATGCTGTATCGATGAATTTGACAAAATGTCTGAGAATGCTAGGAGCATGTTGCATGAGGTGATGGAACAGCAGACTGTTTCTATAGCGAAGGCAGGAATTATTGCTTCACTCAATGCTAGGACCTCAGTTTTGGCTTGTGCCAATCCAATTGGTTCTCGTTACAATCCAAGCTTGACTGTGATTGACAATATACACCTTCCTCCTACCTTACTCTCTAGGTTCGATTTGATTTATTTGATTCTTGACAAGGCCGATGAGAGGACTGATAGACGACTTGCAAAGCATATTGTTGCATTACATTTTGAGAATCCAGAGATTTCAGAGCAGGATTTTGTGGATCTTCCGACATTAACAGCATATATTAGCTATGCCCGTAAGTATATTCACCCTCAAATATCAGATGAAGCGGCAGAAGAGTTAACTCAAAGATATGTTGCCTTGAGGAGCAGAGGAAAATTCCCTGGAAGCAGCAAGAAGGTGATAACAGCAACTCCTAGGCAGATTGAAAGCTTGATACGCCTCAGTGAAGCCCTTGCTCGGATCCGTTTCTCAGAGACGGTTGAAAAGAGTGATGTAGTGGAGGCATATAGGCTTCTGGAAGTTGCAATGCTACAATCGGCACAAGACCCTCGGACTGGAATAATTGATATGGAGGTGATAACTACCGGTGTTTCTGCGAGTGAGAGGATGAGAAGGGATACTCTTGCTTTAGAAACACGAAACATTATTATGGATAAGATGCAACCTGGTGGACCCTCCATGCGTCTCTCACAGTTACTTGATGAGTTGAAGAAGCATACCTCTACTGGTGAAGTCAACCTTCATGATTTAAAGAAAGCAGTAGAGACTCTTGCAAACGAGGGTTTTGTAGCCGTCCAAGGAGGCGATAGCATCAAGAGAATATGA | 2520 | 44.6 | MASDSSQPRNDRTSSPDDSLSSPIGNTASSPGNASRGRKRRGHTTTSAFATTPPHRSRLSSSETTPTPRTGRNGGRRSFVTTPMATSPPSTDDVPLSSEGGDDFDMDEDRPTFVWGTNISVDDVKGAIDRFLKYFRRHRGAQSEGDLHIEGKYMEAIREVLEKEGDSLDIDANDVFDYDSDLYTKMVRYPLEVLAIFDIVLMEMVPRINELFEKNIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMVIRCSSIIPEIREALFRCLVCGYYSDPIPIERGRIIEPKGCLKEECLAKNSMTLVHNRCRFADKQIVKLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRIEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTEKSRMMAEDPMEIEFSQGRNVNDVPFDAETVNKLKELSKQPDIYERLTKSLAPNIWELDDIKKGLLCQLFGGNALKLESGATYRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGQTVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPSLTVIDNIHLPPTLLSRFDLIYLILDKADERTDRRLAKHIVALHFENPEISEQDFVDLPTLTAYISYARKYIHPQISDEAAEELTQRYVALRSRGKFPGSSKKVITATPRQIESLIRLSEALARIRFSETVEKSDVVEAYRLLEVAMLQSAQDPRTGIIDMEVITTGVSASERMRRDTLALETRNIIMDKMQPGGPSMRLSQLLDELKKHTSTGEVNLHDLKKAVETLANEGFVAVQGGDSIKRI | 839 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 30947681 | 30952979 | + | Conep03aG0172700.1 | Cone3ag1220 | 434679 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag1220 | 839 | Pfam | MCM OB domain | 229 | 358 | IPR033762 | - | |
| Cone3ag1220 | 839 | ProSitePatterns | MCM family signature. | 537 | 545 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cone3ag1220 | 839 | FunFam | DNA helicase | 256 | 308 | - | - | |
| Cone3ag1220 | 839 | CDD | MCM4 | 431 | 740 | - | - | |
| Cone3ag1220 | 839 | ProSiteProfiles | MCM family domain profile. | 428 | 634 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone3ag1220 | 839 | SMART | mcm | 225 | 742 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone3ag1220 | 839 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Cone3ag1220 | 839 | Gene3D | - | 229 | 368 | IPR012340 | - | |
| Cone3ag1220 | 839 | FunFam | DNA helicase | 409 | 747 | - | - | |
| Cone3ag1220 | 839 | Pfam | MCM AAA-lid domain | 654 | 740 | IPR041562 | - | |
| Cone3ag1220 | 839 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 439 | 755 | IPR027417 | - | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 529 | 543 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 557 | 570 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 469 | 484 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 608 | 616 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 581 | 593 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone3ag1220 | 839 | MobiDBLite | consensus disorder prediction | 44 | 94 | - | - | |
| Cone3ag1220 | 839 | MobiDBLite | consensus disorder prediction | 1 | 106 | - | - | |
| Cone3ag1220 | 839 | Gene3D | - | 256 | 308 | - | - | |
| Cone3ag1220 | 839 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 121 | 815 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Cone3ag1220 | 839 | SUPERFAMILY | Nucleic acid-binding proteins | 151 | 379 | IPR012340 | - | |
| Cone3ag1220 | 839 | Gene3D | - | 118 | 223 | - | - | |
| Cone3ag1220 | 839 | Pfam | MCM N-terminal domain | 128 | 222 | IPR027925 | - | |
| Cone3ag1220 | 839 | Pfam | MCM P-loop domain | 416 | 638 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 302 | 314 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 444 | 455 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 251 | 264 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 742 | 751 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone3ag1220 | 839 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 590 | 607 | IPR008047 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone3ag1220 | 839 | Gene3D | - | 409 | 753 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0637 | Cone-Chr14:3200945 | Cone3ag1220 | Cone-Chr3:30947681 | 2.78E-98 | dispersed | |
| Cone19ag1277 | Cone-Chr19:8691936 | Cone3ag1220 | Cone-Chr3:30947681 | 6.22E-88 | dispersed | |
| Cone20ag0983 | Cone-Chr20:6964190 | Cone3ag1220 | Cone-Chr3:30947681 | 4.42E-109 | dispersed | |
| Cone2ag0557 | Cone-Chr2:3153268 | Cone3ag1220 | Cone-Chr3:30947681 | 9.76E-67 | dispersed | |
| Cone3ag1220 | Cone-Chr3:30947681 | Cone5ag1384 | Cone-Chr5:8503744 | 2.72E-108 | dispersed | |
| Cone3ag1220 | Cone-Chr3:30947681 | Cone16ag0446 | Cone-Chr16:6781760 | 2.73E-105 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag1220 | K02212 | - | csv:101211850 | 1280.0 |