Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1220 ATGGCGTCCGATTCTTCTCAGCCTAGAAATGACAGAACTTCATCACCGGACGACTCATTGTCGAGTCCAATTGGAAACACTGCGTCGTCTCCAGGGAACGCATCCCGTGGAAGAAAGCGGCGCGGACATACTACTACCTCGGCCTTTGCAACTACACCGCCTCACCGCTCTCGACTTTCCTCCTCAGAAACAACTCCGACTCCTCGAACTGGAAGAAATGGTGGACGAAGATCTTTCGTAACAACACCCATGGCAACCTCTCCTCCGTCCACTGACGATGTTCCTCTCTCCTCTGAAGGCGGCGACGACTTTGACATGGATGAGGACCGTCCGACCTTTGTATGGGGAACAAATATAAGCGTGGATGATGTCAAGGGGGCGATTGATCGGTTTTTGAAGTATTTTCGACGTCACAGAGGGGCACAATCGGAGGGGGATTTGCATATTGAAGGGAAGTACATGGAGGCGATCAGGGAGGTTCTTGAAAAGGAAGGAGATTCACTTGATATAGATGCAAACGATGTGTTCGATTATGATTCAGATTTGTATACGAAGATGGTTAGGTATCCGCTCGAGGTCCTTGCGATTTTTGATATTGTTCTGATGGAAATGGTTCCCAGAATCAATGAATTATTTGAGAAGAATATTCAGACTCGAATATTCAATCTCAAGACCTCAACTTCGATGAGAAATCTAAATCCTTCTGACATTGAGAGGATGGTATCATTGAAAGGGATGGTTATCCGGTGTAGCTCGATAATACCAGAGATTAGGGAAGCACTATTCAGGTGTCTAGTCTGTGGATATTACTCCGACCCCATTCCTATAGAGAGAGGACGAATTATTGAGCCTAAAGGATGTCTGAAGGAAGAGTGTCTGGCCAAGAACTCCATGACACTAGTTCACAACCGATGTAGATTTGCTGATAAGCAGATTGTGAAACTTCAAGAAACTCCTGATGAGATTCCTGAAGGAGGAACACCTCACACTGTGAGCTTGCTGATGCATGATAAGCTGGTTGATGCTGGAAAGCCAGGTGACCGAATTGAGGTTACTGGGATTTATCGGGCCATGAGTGTCAGAGTTGGACCAACACAGAGAACGGTAAAATCATTATTCAAGACTTACATCGATTGTCTTCATATAAAAAAGACTGAAAAGTCGAGGATGATGGCCGAGGATCCCATGGAAATTGAGTTTAGCCAGGGCAGAAATGTGAACGATGTCCCTTTTGATGCAGAAACAGTGAATAAGCTGAAAGAACTATCAAAACAACCAGACATTTATGAGAGATTAACCAAGTCACTGGCTCCTAATATCTGGGAGCTAGATGATATTAAGAAGGGCCTTCTCTGCCAGCTTTTTGGTGGAAATGCATTGAAGTTGGAATCTGGTGCTACCTACCGTGGTGATATTAACATTCTTCTTGTCGGTGATCCTGGAACTAGCAAGTCTCAGCTTCTACAATACATTCACAAGTTATCTCCTCGTGGCATTTACACTAGTGGCCGGGGGAGCTCTGCTGTTGGGTTGACTGCCTACGTTACCAAGGATCCTGAGACAGGGCAAACTGTTCTGGAGAGTGGAGCCTTAGTTCTAAGTGATAGAGGCATATGCTGTATCGATGAATTTGACAAAATGTCTGAGAATGCTAGGAGCATGTTGCATGAGGTGATGGAACAGCAGACTGTTTCTATAGCGAAGGCAGGAATTATTGCTTCACTCAATGCTAGGACCTCAGTTTTGGCTTGTGCCAATCCAATTGGTTCTCGTTACAATCCAAGCTTGACTGTGATTGACAATATACACCTTCCTCCTACCTTACTCTCTAGGTTCGATTTGATTTATTTGATTCTTGACAAGGCCGATGAGAGGACTGATAGACGACTTGCAAAGCATATTGTTGCATTACATTTTGAGAATCCAGAGATTTCAGAGCAGGATTTTGTGGATCTTCCGACATTAACAGCATATATTAGCTATGCCCGTAAGTATATTCACCCTCAAATATCAGATGAAGCGGCAGAAGAGTTAACTCAAAGATATGTTGCCTTGAGGAGCAGAGGAAAATTCCCTGGAAGCAGCAAGAAGGTGATAACAGCAACTCCTAGGCAGATTGAAAGCTTGATACGCCTCAGTGAAGCCCTTGCTCGGATCCGTTTCTCAGAGACGGTTGAAAAGAGTGATGTAGTGGAGGCATATAGGCTTCTGGAAGTTGCAATGCTACAATCGGCACAAGACCCTCGGACTGGAATAATTGATATGGAGGTGATAACTACCGGTGTTTCTGCGAGTGAGAGGATGAGAAGGGATACTCTTGCTTTAGAAACACGAAACATTATTATGGATAAGATGCAACCTGGTGGACCCTCCATGCGTCTCTCACAGTTACTTGATGAGTTGAAGAAGCATACCTCTACTGGTGAAGTCAACCTTCATGATTTAAAGAAAGCAGTAGAGACTCTTGCAAACGAGGGTTTTGTAGCCGTCCAAGGAGGCGATAGCATCAAGAGAATATGA 2520 44.6 MASDSSQPRNDRTSSPDDSLSSPIGNTASSPGNASRGRKRRGHTTTSAFATTPPHRSRLSSSETTPTPRTGRNGGRRSFVTTPMATSPPSTDDVPLSSEGGDDFDMDEDRPTFVWGTNISVDDVKGAIDRFLKYFRRHRGAQSEGDLHIEGKYMEAIREVLEKEGDSLDIDANDVFDYDSDLYTKMVRYPLEVLAIFDIVLMEMVPRINELFEKNIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMVIRCSSIIPEIREALFRCLVCGYYSDPIPIERGRIIEPKGCLKEECLAKNSMTLVHNRCRFADKQIVKLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRIEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTEKSRMMAEDPMEIEFSQGRNVNDVPFDAETVNKLKELSKQPDIYERLTKSLAPNIWELDDIKKGLLCQLFGGNALKLESGATYRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGQTVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPSLTVIDNIHLPPTLLSRFDLIYLILDKADERTDRRLAKHIVALHFENPEISEQDFVDLPTLTAYISYARKYIHPQISDEAAEELTQRYVALRSRGKFPGSSKKVITATPRQIESLIRLSEALARIRFSETVEKSDVVEAYRLLEVAMLQSAQDPRTGIIDMEVITTGVSASERMRRDTLALETRNIIMDKMQPGGPSMRLSQLLDELKKHTSTGEVNLHDLKKAVETLANEGFVAVQGGDSIKRI 839
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 30947681 30952979 + Conep03aG0172700.1 Cone3ag1220 434679
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1220 839 Pfam MCM OB domain 229 358 IPR033762 -
Cone3ag1220 839 ProSitePatterns MCM family signature. 537 545 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cone3ag1220 839 FunFam DNA helicase 256 308 - -
Cone3ag1220 839 CDD MCM4 431 740 - -
Cone3ag1220 839 ProSiteProfiles MCM family domain profile. 428 634 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone3ag1220 839 SMART mcm 225 742 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone3ag1220 839 MobiDBLite consensus disorder prediction 1 34 - -
Cone3ag1220 839 Gene3D - 229 368 IPR012340 -
Cone3ag1220 839 FunFam DNA helicase 409 747 - -
Cone3ag1220 839 Pfam MCM AAA-lid domain 654 740 IPR041562 -
Cone3ag1220 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 755 IPR027417 -
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 557 570 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 484 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 616 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 581 593 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone3ag1220 839 MobiDBLite consensus disorder prediction 44 94 - -
Cone3ag1220 839 MobiDBLite consensus disorder prediction 1 106 - -
Cone3ag1220 839 Gene3D - 256 308 - -
Cone3ag1220 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 121 815 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER)
Cone3ag1220 839 SUPERFAMILY Nucleic acid-binding proteins 151 379 IPR012340 -
Cone3ag1220 839 Gene3D - 118 223 - -
Cone3ag1220 839 Pfam MCM N-terminal domain 128 222 IPR027925 -
Cone3ag1220 839 Pfam MCM P-loop domain 416 638 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 302 314 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 444 455 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 251 264 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 742 751 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone3ag1220 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 590 607 IPR008047 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cone3ag1220 839 Gene3D - 409 753 IPR027417 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0637 Cone-Chr14:3200945 Cone3ag1220 Cone-Chr3:30947681 2.78E-98 dispersed
Cone19ag1277 Cone-Chr19:8691936 Cone3ag1220 Cone-Chr3:30947681 6.22E-88 dispersed
Cone20ag0983 Cone-Chr20:6964190 Cone3ag1220 Cone-Chr3:30947681 4.42E-109 dispersed
Cone2ag0557 Cone-Chr2:3153268 Cone3ag1220 Cone-Chr3:30947681 9.76E-67 dispersed
Cone3ag1220 Cone-Chr3:30947681 Cone5ag1384 Cone-Chr5:8503744 2.72E-108 dispersed
Cone3ag1220 Cone-Chr3:30947681 Cone16ag0446 Cone-Chr16:6781760 2.73E-105 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1220 K02212 - csv:101211850 1280.0