Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1221 ATGGGAGACGCCACCCGCGGAGGGTGCTGTCCGCCGATGGATCTCTTCCGGTCGGAGACAATGCAGCTGGTTCAGCTCATTATCCCAACCGAGTCTGCTCACTTGGCCGTCTCCTACCTCGGCGACCTCGGACCTCTTCAGTTCAAAGATCTCAATACAGAGAAAAGCCCATTTCAGCGAACTTATGCTGCTCAGATTAAAAAATGCGGAGAGATGGCTCGCAAATTGCGGTTTTTCAAGGACCAGATGTCAAAGGCTGGGTTAACCCCCAAAAGCTCCAAGACAGTTGTAGAAATCAGTGTGGATGATCTAGAGGTCCAACTTGGTGAACTTGAGGCTGAGCTTATTGAAATTAATGCTAATGGTGACAAGTTGCAACGTTCTTACAATGAACTCAGAGAATACAAGCTTGTTCTGCAGAAGGGTGGTGAATTTTTTCAAACTGCTCAAAACAGTGCCATCGAGCTGCAGAGAGAATATGAATTGTGTCATATTGGTGAAGAATCTTTAGATACACCACTGTTGTTGGAACAAGAAACATCAACTGATCCCTCGAAGCAAGTTAAGCTAGGCTTTCTCACTGGCCTTGTTCCTAGGGCTAAGTCTCTAGCATTTGAGCGGATTCTATTTCGGGCTACAAGGGGGAATGTGTTTCTAAAGCAGGCTGAGGTTGAGGATCCTATCACTGATCCTGTTTCTGGAGAGAAGATTGAGAAAAATGTGTTTGTTGTTTTCTACTCTGGAGAAAGAGCAAAGAACAAAATTCTAAAAATATGCGAGGCTTTTGGAGCAAGTCGTTACCCTTTTCCTGACGACCTAGGCAGGCAAGCTCAAATGATCGCTGAGGTATCAGGAAGACTCTCAGAGCTGAAGACTATAGTAGATGTGGGAAGGCTACACCGGGAAAATTTGTTGCGCACTATTGGCGATAAGTTTGAGCAATGGAACCTTCTGGTGAAGAAAGAAAAATCCATATATCATACCCTGAACATGCTCAGCCTTGATGTGACGAAAAAGTGTCTTGTCGCCGAGGGGTGGAGTCCTGTTTTTGCATCAAAACAGATCCAAGACGCACTCCAGCGGGCAGCATTTGATTCCAACTCCCAGGTTGGATCCATTTTCCAAGTTCTGCACACAACAGAGGCTCCACCTACCTTTTTCCGTACAAACAAATTCACTTCTTCTTTTCAAGAAATCGTTGATGCATATGGGGTGGCTAAGTATCAAGAAGCGAATCCTGCTGTATATACTATTGTTACATTCCCATTTCTTTTTGCTGTCATGTTTGGTGATTGGGGGCATGGAATATGTTTGTTACTTGTAACACTGTACTTCATAGGCAGGGAAAGAAAGCTATCCAATCAGAAGCTTGGCGATATCATGGAAATGACTTTCGGTGGGCGTTATGTAATTATGATGATGGCAATCTTTTCAATCTACACTGGTCTAATCTATAATGAGTTCTTTTCTGTTCCTTTTGAACTGTTTGGCCGCTCAGCATATGCATGCCGTGACCTTGATTGCAAAGATGCTACGACAATAGGGTTAATCAAAGTGCGTCCCACCTATCCATTTGGTTTGGACCCTGTATGGCATGGCAGTCGTAGCGAGCTTCCATTCCTCAACTCTTTGAAGATGAAAATGTCAATCCTTCTTGGAGTTGCACAAATGAACCTTGGAATCATTATAAGCTATTTCAATGCCAAATTCTTCAGGAATAGCATTAATATATGGTATCAATTCCTGCCGCAGTTGATATTTCTAAACAGTCTTTTTGGCTACCTGTCGCTCCTTATCATCATTAAGTGGTGTACTGGTTCAAAAGCAGATTTATACCATGTAATGATATACATGTTCCTGAGTCCCACTGACGATCTAGGAGAAAACCAGCTTTTTCCTGGCCAAAAAACCACTCAGCTTGTGTTACTTTTGCTGGCCCTTATTGCTGTACCCTGGATGCTTATTCCAAAGCCTTTTCTCTTGAAGAAACAGCACCAAGAGAGGCACCAAGGCCAAACTTATGTGCCACTTCGGGGAGCAGAGGACGAACTTTCATTGGATTCACATCATCATTCCAGTGGGCATGAGGAGGGGCACGAGGAGTTTGAATTCAGTGAAGTTTTTGTGCATCAACTTATACATACCATAGAATTTGTTCTTGGTGCAGTGTCTAATACAGCCTCATACCTTCGTCTATGGGCCCTGAGTCTTGCCCACTCGGAACTGTCAAGTGTATTCTACGACAAAGTTCTTCTTCTTGCTTGGGGATACAACAATTGGATTATCCTTTTAGTGGGCATAATCGTCTTTGTATTTGCTACCGTTGGAGTATTACTGGTGATGGAAACCCTAAGCGCTTTCCTTCACGCCCTTCGGCTCCACTGGGTGGAGTTCCAAAACAAGTTTTACGAGGGAAATGGTTATAAATTCTACCCGTTTTCATTTTCTCTGATCGATATTGATGAAGATGAGTGA 2475 43.6 MGDATRGGCCPPMDLFRSETMQLVQLIIPTESAHLAVSYLGDLGPLQFKDLNTEKSPFQRTYAAQIKKCGEMARKLRFFKDQMSKAGLTPKSSKTVVEISVDDLEVQLGELEAELIEINANGDKLQRSYNELREYKLVLQKGGEFFQTAQNSAIELQREYELCHIGEESLDTPLLLEQETSTDPSKQVKLGFLTGLVPRAKSLAFERILFRATRGNVFLKQAEVEDPITDPVSGEKIEKNVFVVFYSGERAKNKILKICEAFGASRYPFPDDLGRQAQMIAEVSGRLSELKTIVDVGRLHRENLLRTIGDKFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFASKQIQDALQRAAFDSNSQVGSIFQVLHTTEAPPTFFRTNKFTSSFQEIVDAYGVAKYQEANPAVYTIVTFPFLFAVMFGDWGHGICLLLVTLYFIGRERKLSNQKLGDIMEMTFGGRYVIMMMAIFSIYTGLIYNEFFSVPFELFGRSAYACRDLDCKDATTIGLIKVRPTYPFGLDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNAKFFRNSINIWYQFLPQLIFLNSLFGYLSLLIIIKWCTGSKADLYHVMIYMFLSPTDDLGENQLFPGQKTTQLVLLLLALIAVPWMLIPKPFLLKKQHQERHQGQTYVPLRGAEDELSLDSHHHSSGHEEGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNNWIILLVGIIVFVFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGNGYKFYPFSFSLIDIDEDE 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30955706 30971215 + Conep03aG0172800.1 Cone3ag1221 434680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1221 824 PANTHER VACUOLAR PROTON ATPASES 13 820 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Cone3ag1221 824 PIRSF ATP6V0A1 11 824 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cone3ag1221 824 Coils Coil 94 128 - -
Cone3ag1221 824 Pfam V-type ATPase 116kDa subunit family 39 815 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1375 Cone-Chr17:9549760 Cone3ag1221 Cone-Chr3:30955706 1.24E-183 dispersed
Cone1ag0698 Cone-Chr1:6499372 Cone3ag1221 Cone-Chr3:30955706 0 dispersed
Cone20ag0107 Cone-Chr20:482563 Cone3ag1221 Cone-Chr3:30955706 0 dispersed
Cone3ag1221 Cone-Chr3:30955706 Cone5ag1206 Cone-Chr5:5498320 0 dispersed
Cone10ag1105 Cone-Chr10:7840508 Cone3ag1221 Cone-Chr3:30955706 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1221 K02154 - vvi:100258865 1343.18