Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1223 ATGGGAAAGAACAAGAGAATGGAAGAGGTAGGCGAAGATGAAGCTTCTGCCAGTAATCACTCCCCCTCCACTGTCTTCGTCTCTAACTTGCCCTACTCCTTCACTAACTCTCAGCTTGAAGAAACGTTCAATGATGTCGGTCCAGTCAGGCGGTGCTTCATGGTTACTGAAAAGGGATCAACTAAGCACCGAGGTTTTGGTTTTGTCCAATTTGCTATTACTGAAGATGCAAATTGTGCAATTGAGCTGAAGAATGGTTCATCGGTGGGGGGACGCAAAGTGGCTGTCAAACATGCAATGCATCGACCATCCCTACAGCAGCGCCGATCAAAGGAAAATCAAGATAGTACTATGAAGTCGAAGAGTGACGTAAGGGGTGACATCCCAAAGGCAGAGAAGATTGTTGCTTCAGACTTAGAGGAAAGAGCCGATTTAGGGAAGCATGTGGAGGCTGGCAAAGCAACCCTAGTTCCGAGTGATTCAGTAGATGGAGGTGGTTCAGCAAATCCAGGGAAGCCTGTAGAAGGTAGGAAAGCAGCACCAGTTCCGAGTGATTCAGCTAAGAAAGGGAAGCGGGTAGAATCAGGGAAAGCAACTCAAGAAGCTCTGATTGATTCAGCAGAGAAAACTGGTTCAGAAAAGCAAAGGATTGCTAGAACTGTTATTTTTGGTGGTCTTCTTAATGCTGAAATGGCAGAAGCTGTCCACAACGGAGCTAGGGAGATTGGTACTGTTTGTTCTGTAACGTTTCCTCTTCCAAAAGAAGAATTGCACCAATATGGTCTTATGCAAGATGGGTGCAGAATGGATGCTTCAGCTATACTTTTTACAAGTGTGAAATCAGCTTGTGCTGCTGTTGCAATGCTACACCAGAAAGAGGTTGAAGGGGGAACTGTGTGGGCCCGTCAACTTGGTGGAGAGGGATCCAAAACTCAGAGATGGAAACTTATTGTTAGAAATCTTCCTTTCAAGGCCGAAGAGAATGAGATAAGGGAAACGTTTTCATCTACTGGGTTTGTTTGGGATGTGTTCATTCCCCATAAGTCTGAGGAGGGATTATCGAAGGGATTTGCATTTGTCAAATTTACATGCAAACAAGATGCAGAAAATGTCATCAAAAAGTTTAATGGGCAAAAGTTCGGTAAAAGACCAATAGCTGTGGACTGGGCAATTCCAAAGAAAGTATATAGCAGTGGTGCTAGTGGCTCTCTTGCTCCAGGAGAAGGGCAAGGAAATGAAAGCAACCAGGATGGTAACAGCAGTAGTGTTGATATTGAAGATGTTATGCAGGATTCTAAGAAGCAGTCTGAGTATGCTGATGAGGCTAATAGTGCTTCAGATGATGATTCCGTTGCAACAGACGATAAAGACCTGCCTACAGCAGTGGCTGATTTTGACGAGGAAGCTGACATAGCAAGAAAAGTCCTAAAAAACTTGATGACATCTTGTGAAAGAGAAACCCTACCTTCTCTCAATGATGATCCCATGTCATTCAAGAATAATGAGGAGCTAGAGGTTCCTGAAACTGTTGACTTACCAGTTAACTTGTCTGATGAGTCAGAACCAGTTAATACCGGACAATCAGATGAAAATACCAAATATCTAAAACCGACAGATGATGAAGATGGTTTACAGAGGACAGTTTTCATAAGCAATATTCCTTTTGAATTTGACAAGGAAGAAGTGAAGCAAAGATTTTCTGGGTTTGGTGAAGTTTTATCCTTTGTCTCTGTACTTCATCCTGTGACCAAGCGACCCAAGGGAACCGGTTTTCTAAAGTTTAAAACAGTAGATGCTGCTACTGCAGCTGTTTCAGCTGCACATACTGAATCTGGTTTGGGAATTTTTCTGAAAGGTCGGCAGTTGACAGTATTGAAGGCTTTGGATAAGAAATCAGCTCATAATAAGGAATTGGAGAAGTCCAAAAATGAAAATCAGGATCATCGGAATCTTAACCTAGCAAAGGAAGGTCTGATAGTTGAGAGGACCCCAGCTGCTGAAGGAGTTTCAGCTGATGATATGTTGAAACGCCAAACGCTTGAGAGGTCAAAGATGACTAAGCTACAATCTCCAAATTTTCATGTTTCGAGGACTAGGCTTGTTATATACAATTTACCAAAATCGATGAATGAAAAGGCTCTCAAAAAGCTTTTAATTTCAGCAGTTATCTCACGAGCTTCCAAGCAAAAACCTGTCATTCGGCAGATAAAGTTTCTGAATAATATGAAGAATAGTAAGATCACAACAAAGAACCACTCACGTGGAGTTGCTTTTGTTGAGTTTTCTGAACACCAGCATGCACTTGTCGCCCTGAGAGTTCTCAACAATAATCCTGAAACGTTTGGTCCTGAGCATCGCCCGATTGTGGAGTTTGCTCTTGATAATATCCAAACTTTGAAAATACGGAAATCTAAGCTTCAAGCTCAGCAGCAAAATAATCATAAAGACAATGAAGACATGCATCAAAATGTCGAGATGCATAAAGAAGATATCAAATCCACTAAGAAAGAGAATTCTAGAAAACGGAAACCCACTGGTGATCATAATAAGCCATTTAAGGATCCCATACCAAATAAAGATAAAGCAGAAACCCATAAGGAATCCAGAGGATTTGCCAAAGAAAATCGAATGGTTGTTAAGAAGCAGAAAACAAATCCAGGAAAAGAGTTTTCTCGGCAAGGAAAATCAGTGGGCCCCATAGAGAAGAATAAGCCTCTTCACAATTTTCGCAATGATAATGAGATCAATGGTAGCAGCAGATCGCTTGGAGGGTCGTCTGAGAAAGATGATACACAGCATAAGAAGAGAAAGTTTGGAGACAGATCAGCAAGTCATCAGAATACAGAAGAAAATGCAAAGAGAAAAAGGTCAAAAAAGAACAAGGATCCGATTGGCCGAGATTCAGTTGACAAACTCGACATGTTAATTGAACAATATCGATCCAAGTTTTCGAATCAGAGTTCTGATGGTGAAAAGAAGAGTATTAGACAGGTTAGGAAATGGTACCAATCATAA 3015 41.49 MGKNKRMEEVGEDEASASNHSPSTVFVSNLPYSFTNSQLEETFNDVGPVRRCFMVTEKGSTKHRGFGFVQFAITEDANCAIELKNGSSVGGRKVAVKHAMHRPSLQQRRSKENQDSTMKSKSDVRGDIPKAEKIVASDLEERADLGKHVEAGKATLVPSDSVDGGGSANPGKPVEGRKAAPVPSDSAKKGKRVESGKATQEALIDSAEKTGSEKQRIARTVIFGGLLNAEMAEAVHNGAREIGTVCSVTFPLPKEELHQYGLMQDGCRMDASAILFTSVKSACAAVAMLHQKEVEGGTVWARQLGGEGSKTQRWKLIVRNLPFKAEENEIRETFSSTGFVWDVFIPHKSEEGLSKGFAFVKFTCKQDAENVIKKFNGQKFGKRPIAVDWAIPKKVYSSGASGSLAPGEGQGNESNQDGNSSSVDIEDVMQDSKKQSEYADEANSASDDDSVATDDKDLPTAVADFDEEADIARKVLKNLMTSCERETLPSLNDDPMSFKNNEELEVPETVDLPVNLSDESEPVNTGQSDENTKYLKPTDDEDGLQRTVFISNIPFEFDKEEVKQRFSGFGEVLSFVSVLHPVTKRPKGTGFLKFKTVDAATAAVSAAHTESGLGIFLKGRQLTVLKALDKKSAHNKELEKSKNENQDHRNLNLAKEGLIVERTPAAEGVSADDMLKRQTLERSKMTKLQSPNFHVSRTRLVIYNLPKSMNEKALKKLLISAVISRASKQKPVIRQIKFLNNMKNSKITTKNHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNIQTLKIRKSKLQAQQQNNHKDNEDMHQNVEMHKEDIKSTKKENSRKRKPTGDHNKPFKDPIPNKDKAETHKESRGFAKENRMVVKKQKTNPGKEFSRQGKSVGPIEKNKPLHNFRNDNEINGSSRSLGGSSEKDDTQHKKRKFGDRSASHQNTEENAKRKRSKKNKDPIGRDSVDKLDMLIEQYRSKFSNQSSDGEKKSIRQVRKWYQS 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30993176 31009778 + Conep03aG0173000.1 Cone3ag1223 434682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1223 1004 PANTHER RNA-BINDING MOTIF PROTEIN 14B 20 1004 IPR051945 GO:0003729(PANTHER)
Cone3ag1223 1004 CDD RRM4_RBM28_like 698 795 - -
Cone3ag1223 1004 Coils Coil 624 651 - -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 910 925 - -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 146 200 - -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 403 426 - -
Cone3ag1223 1004 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 698 806 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 105 131 - -
Cone3ag1223 1004 FunFam RNA-binding motif protein 28 697 792 - -
Cone3ag1223 1004 SUPERFAMILY RNA-binding domain, RBD 310 418 IPR035979 GO:0003676(InterPro)
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 400 456 - -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 1 15 - -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 486 538 - -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 182 198 - -
Cone3ag1223 1004 Gene3D - 498 643 IPR012677 -
Cone3ag1223 1004 Gene3D - 300 425 IPR012677 -
Cone3ag1223 1004 Gene3D - 2 129 IPR012677 -
Cone3ag1223 1004 Coils Coil 789 809 - -
Cone3ag1223 1004 CDD RRM1_RBM28_like 24 102 - -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 518 532 - -
Cone3ag1223 1004 Gene3D - 697 792 IPR012677 -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 812 888 - -
Cone3ag1223 1004 SMART rrm1_1 699 790 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 SMART rrm1_1 24 97 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 SMART rrm1_1 547 625 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 SMART rrm1_1 315 388 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 SUPERFAMILY RNA-binding domain, RBD 22 300 IPR035979 GO:0003676(InterPro)
Cone3ag1223 1004 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 99 131 - -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 804 1004 - -
Cone3ag1223 1004 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 392 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 546 629 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 926 977 - -
Cone3ag1223 1004 SUPERFAMILY RNA-binding domain, RBD 546 776 IPR035979 GO:0003676(InterPro)
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 1 22 - -
Cone3ag1223 1004 MobiDBLite consensus disorder prediction 427 441 - -
Cone3ag1223 1004 Coils Coil 817 837 - -
Cone3ag1223 1004 CDD RRM2_RBM28_like 315 391 - -
Cone3ag1223 1004 Pfam RNA recognition motif 25 94 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 Pfam RNA recognition motif 548 608 IPR000504 GO:0003723(InterPro)
Cone3ag1223 1004 Pfam RNA recognition motif 316 385 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1223 K14573 - - cit:102622608 1040.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1223 Cone-Chr3:30993176 Cone4ag0705 Cone-Chr4:3690151 6.23E-07 dispersed
Cone10ag1108 Cone-Chr10:7874223 Cone3ag1223 Cone-Chr3:30993176 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g4 . . . . . . Bma05g00433 . . . Cma02g00374 Cma20g00823 Car02g00241 Car20g00709 . . . . . . . . . . . . . . . . . Cone12ag1171 Cone8ag1218 Cone3ag1223 Cone10ag1108 Lsi10g00402 . Chy11g00350 . . . . . . . . . Sed02g0459 Cmo02g00381 Cmo20g00834 . . . . Cpe16g00265 Cpe05g01281 Bhi10g01966 Tan05g1259 Cmetu05g0753 . Hepe08g0990 . . . . . . . . . . Csa02g01292 . Cme11g00154
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34