Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1227 ATGGGTTGCTGCGAGTCCTCGTTTTTAACAGAGACTCACCCCGAAAAGCAGCAACAAAACCCACAAACCCGCCTCCACACTCAGACCAACCCACCCGATTCCACTCGACCCGAACGGAAAACAAACGGACCCGTTCCTGTTTCTGCTTTTGCTGAGTTCTCCTTCTCCGACCTCAAATCTGCCACCAGCAACTTCAGCTCCGACCTCATCGTTTCGGAAAGTGGCGATAAAGCACCCAACGTTGTCTACAAGGGCCGCCTACCAGACTCGAACTGGATCGCAGTGAAGAAATTCACGAAAATGGCCTGGCCCGACCCGGTTCAATTCGCGGGGGAGGCTCGAAGCGTAGGTAAGTTGAGGAATCGGAGGTTGGCTAATTTGATAGGATTTTGCTGTGAAGGCGATGAAAGGTTGCTTGTTGCCGAGTATATGCCTAACAATACTCTTGCCAAGCATTTGTTTCACTGGGAAGATCAAACAATTGAGTGGGCCATGCGGTTAAGAGTAGCTACTGTTATTGCAGAAGCCTTAGATTATTGTAGTACGGAGGGCCGTCTATTATACCATGACTTGAATGTATATCGAGTTCTCTTTGACGAGGGTGGCGAACCACGTCTTTCATGCTTTGGATTGATGAAGAACAGCATGGATGGAGACAATTATAGCACAAATCTTGCTTACACTCCTCCTGAATATTTAAGAAATGGAAGCATCACCCCTGAAAGTGTTATTTATAGCTTTGGAAATGTCCTTCTGGATCTACTAAGTGGCAAGCATCTCCCTCCAAGCTATGCACTTGATCTGATTCGAGGAAAAAATATCAGTCTGTTAATGGACTCACATTTGGAGGGAAAGTTTTCAACCGAAGAAGCAACAGTTGTTGTTGATCTTGCCTCGAGATGTTTGCAATCTGAACCTGAGCAGAGACCTACTTCCAATGATCTTGTTGTGGCCCTTGCTCCACTGGAAACCAAACCTGATGTTACTTCATTTCTCGTGAATGGAGTTAAGAAGGAAGAGGAAGCCCCATTGACCCCACAGACCCCACAAGGCCCTCTATCACCCATGGGCGAGGCCTGTTCACGAATGGACCTAACTGCAATCTATCAGATACTGTTTTCTACAAACTACAAAGACGATGAGGGAACCAAGGAGTTATCTTTCCAAGAGTGGACCCAGCAAATGAAAAATACTCTTGAAGCAAGGAAGTTAGGGGATGCTGCCTTCCGTTTACAAAATTTTAAGACTGCAATAGATTGCTATTCTCAGTTCATAGATGGAGGAACCTTGGTGTCCCCAACGGTTTTTGCGAGAAGAAGTCTATGCTATTTGTTATGTGATCAGGCAGATGCAGCCCTTAGAGATGCCATGCAAGCTCAATGTGTCTATCCAGACTGGTCCACTGCCTTCTACCTGCAGTCTGTCGCTCTTGCAAAACTTGACATGAACAAGGATGCTCTTGACATGTTGAATGAAGCATCCATCTTAGAAGAAAATAGACAACGCTATAATCACCGCTAG 1521 45.96 MGCCESSFLTETHPEKQQQNPQTRLHTQTNPPDSTRPERKTNGPVPVSAFAEFSFSDLKSATSNFSSDLIVSESGDKAPNVVYKGRLPDSNWIAVKKFTKMAWPDPVQFAGEARSVGKLRNRRLANLIGFCCEGDERLLVAEYMPNNTLAKHLFHWEDQTIEWAMRLRVATVIAEALDYCSTEGRLLYHDLNVYRVLFDEGGEPRLSCFGLMKNSMDGDNYSTNLAYTPPEYLRNGSITPESVIYSFGNVLLDLLSGKHLPPSYALDLIRGKNISLLMDSHLEGKFSTEEATVVVDLASRCLQSEPEQRPTSNDLVVALAPLETKPDVTSFLVNGVKKEEEAPLTPQTPQGPLSPMGEACSRMDLTAIYQILFSTNYKDDEGTKELSFQEWTQQMKNTLEARKLGDAAFRLQNFKTAIDCYSQFIDGGTLVSPTVFARRSLCYLLCDQADAALRDAMQAQCVYPDWSTAFYLQSVALAKLDMNKDALDMLNEASILEENRQRYNHR 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31055108 31059322 + Conep03aG0173400.1 Cone3ag1227 434686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1227 506 FunFam probable serine/threonine-protein kinase At4g35230 40 143 - -
Cone3ag1227 506 FunFam probable serine/threonine-protein kinase At5g41260 145 336 - -
Cone3ag1227 506 SUPERFAMILY Protein kinase-like (PK-like) 50 321 IPR011009 -
Cone3ag1227 506 MobiDBLite consensus disorder prediction 1 44 - -
Cone3ag1227 506 Gene3D Transferase(Phosphotransferase) domain 1 145 333 - -
Cone3ag1227 506 MobiDBLite consensus disorder prediction 10 37 - -
Cone3ag1227 506 ProSiteProfiles Protein kinase domain profile. 68 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag1227 506 SUPERFAMILY TPR-like 396 499 IPR011990 GO:0005515(InterPro)
Cone3ag1227 506 FunFam probable serine/threonine-protein kinase At4g35230 396 505 - -
Cone3ag1227 506 Gene3D Phosphorylase Kinase; domain 1 41 143 - -
Cone3ag1227 506 Gene3D Tetratricopeptide repeat domain 395 506 IPR011990 GO:0005515(InterPro)
Cone3ag1227 506 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 17 502 IPR045845 GO:0004672(InterPro)|GO:0009742(InterPro)|GO:0009742(PANTHER)
Cone3ag1227 506 Pfam Protein tyrosine and serine/threonine kinase 82 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1227 K14500 - - vvi:100265782 779.245
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1441 Cone-Chr17:9818822 Cone3ag1227 Cone-Chr3:31055108 2.86E-259 dispersed
Cone20ag0036 Cone-Chr20:190196 Cone3ag1227 Cone-Chr3:31055108 5.99E-259 dispersed
Cone3ag1227 Cone-Chr3:31055108 Cone7ag1925 Cone-Chr7:12298592 6.41E-261 dispersed
Cone3ag1227 Cone-Chr3:31055108 Cone4ag2009 Cone-Chr4:14000251 2.55E-262 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g243 . . . . Bpe07g00697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1227 . Lsi10g00824 . . . . . . . . . . . . . . . . . . . . Bhi10g01232 . . . . . . . . . . . . . . . . Cme11g01222
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000526 3 6 2 3 3 3 6 3 3 3 3 3 6 3 3 6 3 5 6 3 3 3 3 3 2 3 3 6 5 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82698 PF02990 EMP70 9.30E-166 No_clan Cone PK