Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1230 ATGGCTTTGTTCATTTCGCTCTTCTTCTTACTAATTATTTCTTGTACAAATGCTTGTTGTGTTCACCAATCCAAGGCTACTTATTTCAGAAACACTTCTGCACTTTCATCTGGAGCTTGTGGGTATCGTTCAATAGCATTAGGCCTTAGTGGTGGACACCTAGCAGCTGGTGTGCCTTCGCTTTACAGAGATGGAGCTGGTTGTGGGGCTTGCTTTCAGATAAGATGCAACGATGTTAAATTATGTTCAAAAGCCGGGACTCAAGTGACTTTGACTGATCAAAATCTTAACAACGGAACAGATTTTGTTCTCAGCAGCAGAGCTTTCATGGCCATGGCTCAGAAGGGCATGGCCAATGACATCTTGAAACATGGGATTCTCGACGTTGAATACAAGAGGGTTCCATGTGTATATAAGAATAAGAATTTGACTGTGAGAGTGGAGGAATCAAGCAAAAAACCTCAATATTTAGCAATCAAATTTTTATACCAAGGTGGTCAGACAGAAATAGTTGGGGTTGATGTAGCTCCGGTCGGTTCTTCAAATTGGAGCTTTATGAGTAGAAACCATGGAGCTGTGTGGGACACAAGCAGAGTACCAAATGGGCAATTACAAATGCGATTGGTTGTAACAGCAGGGTATGATGGGAAGTGGATTTGGGCTAAGAGTGTTCTTCCTGCTGATTGGAAAGCTGGACTACTTTATGACACAGGTGTTCAAATTAGGGACACTGCACTAGAAGGTTGCTCCACTTGTGATGATGGCGATTGGAAATGA 777 42.47 MALFISLFFLLIISCTNACCVHQSKATYFRNTSALSSGACGYRSIALGLSGGHLAAGVPSLYRDGAGCGACFQIRCNDVKLCSKAGTQVTLTDQNLNNGTDFVLSSRAFMAMAQKGMANDILKHGILDVEYKRVPCVYKNKNLTVRVEESSKKPQYLAIKFLYQGGQTEIVGVDVAPVGSSNWSFMSRNHGAVWDTSRVPNGQLQMRLVVTAGYDGKWIWAKSVLPADWKAGLLYDTGVQIRDTALEGCSTCDDGDWK 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31083531 31084960 - Conep03aG0173700.1 Cone3ag1230 434689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1230 258 SUPERFAMILY PHL pollen allergen 141 236 IPR036749 -
Cone3ag1230 258 PANTHER EXPANSIN-B3 7 243 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cone3ag1230 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 37 141 IPR007112 -
Cone3ag1230 258 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1230 258 PRINTS Major pollen allergen Lol pI signature 162 177 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1230 258 PRINTS Major pollen allergen Lol pI signature 213 230 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1230 258 PRINTS Major pollen allergen Lol pI signature 56 67 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1230 258 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone3ag1230 258 CDD DPBB_EXLA_N 14 138 - -
Cone3ag1230 258 Pfam Expansin C-terminal domain 144 226 IPR007117 -
Cone3ag1230 258 FunFam Expansin-like A2 138 242 - -
Cone3ag1230 258 SUPERFAMILY Barwin-like endoglucanases 9 139 IPR036908 -
Cone3ag1230 258 Gene3D - 12 136 IPR036908 -
Cone3ag1230 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 237 IPR007117 -
Cone3ag1230 258 Pfam Lytic transglycolase 55 131 IPR009009 -
Cone3ag1230 258 Gene3D - 137 242 IPR036749 -
Cone3ag1230 258 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576(InterPro)
Cone3ag1230 258 PRINTS Expansin/Lol pI family signature 124 140 IPR007118 GO:0005576(InterPro)
Cone3ag1230 258 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576(InterPro)
Cone3ag1230 258 PRINTS Expansin/Lol pI family signature 36 54 IPR007118 GO:0005576(InterPro)
Cone3ag1230 258 PRINTS Expansin/Lol pI family signature 183 197 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1261 Cone-Chr12:9682967 Cone3ag1230 Cone-Chr3:31083531 2.79E-99 dispersed
Cone3ag1230 Cone-Chr3:31083531 Cone8ag0450 Cone-Chr8:2867253 1.00E-55 dispersed
Cone3ag1230 Cone-Chr3:31083531 Cone8ag1316 Cone-Chr8:10674331 3.60E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1230 - - - 0.0