Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1247 ATGGAATACTACACAACGAATTCAACCTACGGAGACTTATCAGCCACGAGTAGCACCATGGAGTTAGATTTTATGGATGAACTTCTGTACGAAGGGCGTTGGTTAGAAACCGCGGCTAATACCACGACTCTGGCGGCAATTAATGGATCAATCAACTTCTTTCCATCACCTCCTTCTACTACGTCTTCTTCGCTTCGTCCTCTAATATTCAGTGACCCTAATTATGCCAGCGTTAATCATTTCCCCCCTCCAACTGTTCACCATCTTGATGAAAATGTACAAGAGATCGAAGTGGGGTCCAGATCAGCTAATTTAACATACCACATGGGATCAGGACGGTTTGTACTATCTTCTAGTTCGTCGATTAAAGAGAGATTGATGTTTGCAATTGGTTACTTAAAAGAGTGCACAAAAGATAGAGAAGTTCTAATTCAGATGTGGGTTCCTATTAAAAAGGGAGGTAGACAATTTCTTACAACTCAAGATCAACCCTATTCTTTCAACCCGAATTGCAAAAGTTTAGCAAATTTCAGAAAGGTTTCAAGTGATTATAAGTGTGAATTAGATGATCAAGATGACGATCATGAGGCCAGTTTGATGCTTGGTCGGGCTTTTATGGGGAAGTTGCCTGAGTGGAGCCCAGATGTTCGTTACTTCAAAAAAAATGAGTATCCACGTGTCGGTTATGCTCAAGAGTATGATGTGAAAGGATCTCTTGCTCTTCCTGTTTTTGAACGAAGTGATGATCAAGAGGGGACTTGTTTGGGTGTCGTTGAGATTGTGATGACTTCTCAAAGGATCACTTTCCGACCTGAACTTGAGTACATCAGCCAAGCTCTTGAGGCTGTTGATCTTAGAAGCTTTCACAACTTCATCCCTCCCATAGTAAAGGTCTACGATGAGTACTACCAAGCAGCCTTGGCCGAAATAGTAGACATTCTAACATCAATCTGTCAGACACATAGATTACCTCTTGCCCTAACATGGGCACCTTGTACCCATCAAGGCAAACCCGGCTGCCGGCATTCTTACAACAACTACACTCACTGTCTTTCAACCATCGATTCTGCTTGTCTTATCACAGACCCCAAAACCGTTGGATTTCATGAAGCATGCTCCAATCACCATCTCTTCCATGGCCAAGGAATTGTCGGAACATCCTTCACAACTAGCAAACCATGCCTTGCGGTTGATATAACCGCCTTTAACAAGATGGAATACCCTCTCTCTCACCATGCTATAATGTTTGGTCTCCTTACTGCTCTTGCAATCCCTCTTAAGAATCCTTATAGTACTATTGGAGCACCAGTTGATTTCGTGTTGGAGCTTTTCTTGCCTAAGGATTGTGTTGATGGTGAGGAGCAAAAGAAAATATTGAACTCTTTGTCTATTGTTATTCAAAAAAATTGTCGAATTTTGCATGTTGCTATGGATCACAAAGAAGTTCATGAAGAAGTAGACTGTGGTGAAAAGGAATCAGCTTCTTGGGTTGCTAGCATGATGGAGGCAGAAATGAAAGGTAAAGGAGTTTTCGTGTCGTTGGATTATCAGAGTGAAGAGCCAAGGGAGGAGTTTAGGGTGACAACCAATTGGGATAATAATTTTCATGGGGGATTGATAAGTACTTGTCATGAGGTATTTCAAGATTATAAAGGGCAAGTAGTACTTCAACAAAGCTTGGGAGTAGTTGCTAAGGAAGGTGGTGAGGGTGGGGGAGATTCTTATTCTTATGAGGGGAGGAGGCCATCGAGTGGTAGGAAAGCTGGGGAGAAGAGACGGACCAAGGCAGAGAAGACTATTAGCTTGCCGGTTCTTCGTCAATACTTTGCCGGCAGTTTGAAAGATGCTGCTAAGAGTATCGGAGTTTGTCCCACTACACTGAAAAGAATATGCAGGCAACATGGGATCACAAGGTGGCCATCTAGGAAGATAAAGAAAGTCGGCCACTCTTTAAAGAAACTCCAACTTGTAATAGACTCAGTTCAAGGAGCTGGTGGAGCTATTCAGATTGATTCCTTCTATAAGAGCTTCCCTCAATTGAGCTCTTCTTCCAACTTTCCTACTCTCAATCATGACCACCACCAGCATCACCATCACCCAGCACAACTAAACCATCTTCAAGCTGAGAGTTCCCTATTCAGCCATGGAGCCCCAGCCAAGTCCCCTACTTCTTCGTGTAGTCAAACCTCTAACCCCTATGCGGTTGCCACTCTAACTGCCTTTAGAGGCGGAGATTGTTTAGTGCCCGAAGACCATCCTTTCAGAGAGCAGTTTGAAATTTTGCCTCCGTTACATGATAGTGGCCTAAACTCATTAGATGGAGGTGCTTTTAGAGTTAAAGTTAGTTTTGGTGAACAAAATATGAGATTCAACATGGAACCCAACTGGGGTTTTAGAGATTTGCAAGTGGAAGTTGCAAAGCGGTTCAATTTGGAGGATGCGAATGGGGTTGACATCAAGTATGTTGATGATGATCATGAATGGGTTCTTTTGACATGCGATGCTGACCTTCAAGAGTGTAGAGAGATTTATAGATCATCGAAAAGCCATACAATCAAACTCTCACTTCATTGGCCTTCTCATCAAAGTTTTGGTAATAGCAGCACATCTTAA 2613 42.71 MEYYTTNSTYGDLSATSSTMELDFMDELLYEGRWLETAANTTTLAAINGSINFFPSPPSTTSSSLRPLIFSDPNYASVNHFPPPTVHHLDENVQEIEVGSRSANLTYHMGSGRFVLSSSSSIKERLMFAIGYLKECTKDREVLIQMWVPIKKGGRQFLTTQDQPYSFNPNCKSLANFRKVSSDYKCELDDQDDDHEASLMLGRAFMGKLPEWSPDVRYFKKNEYPRVGYAQEYDVKGSLALPVFERSDDQEGTCLGVVEIVMTSQRITFRPELEYISQALEAVDLRSFHNFIPPIVKVYDEYYQAALAEIVDILTSICQTHRLPLALTWAPCTHQGKPGCRHSYNNYTHCLSTIDSACLITDPKTVGFHEACSNHHLFHGQGIVGTSFTTSKPCLAVDITAFNKMEYPLSHHAIMFGLLTALAIPLKNPYSTIGAPVDFVLELFLPKDCVDGEEQKKILNSLSIVIQKNCRILHVAMDHKEVHEEVDCGEKESASWVASMMEAEMKGKGVFVSLDYQSEEPREEFRVTTNWDNNFHGGLISTCHEVFQDYKGQVVLQQSLGVVAKEGGEGGGDSYSYEGRRPSSGRKAGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAGGAIQIDSFYKSFPQLSSSSNFPTLNHDHHQHHHHPAQLNHLQAESSLFSHGAPAKSPTSSCSQTSNPYAVATLTAFRGGDCLVPEDHPFREQFEILPPLHDSGLNSLDGGAFRVKVSFGEQNMRFNMEPNWGFRDLQVEVAKRFNLEDANGVDIKYVDDDHEWVLLTCDADLQECREIYRSSKSHTIKLSLHWPSHQSFGNSSTS 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31282019 31286372 + Conep03aG0175400.1 Cone3ag1247 434706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1247 870 Pfam NLP protein GAF domain 299 473 IPR055081 -
Cone3ag1247 870 MobiDBLite consensus disorder prediction 571 595 - -
Cone3ag1247 870 Pfam RWP-RK domain 600 647 IPR003035 -
Cone3ag1247 870 SUPERFAMILY CAD & PB1 domains 765 862 - -
Cone3ag1247 870 Pfam PB1 domain 777 857 IPR000270 GO:0005515(InterPro)
Cone3ag1247 870 ProSiteProfiles PB1 domain profile. 776 859 IPR053793 -
Cone3ag1247 870 PANTHER PROTEIN NLP8 91 866 IPR045012 GO:0003700(InterPro)
Cone3ag1247 870 SMART PB1_new 776 859 IPR000270 GO:0005515(InterPro)
Cone3ag1247 870 ProSiteProfiles RWP-RK domain profile. 586 667 IPR003035 -
Cone3ag1247 870 CDD PB1_NLP 777 857 IPR034891 -
Cone3ag1247 870 Gene3D - 775 857 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1247 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1247 Cone-Chr3:31282019 Cone7ag1936 Cone-Chr7:12353709 6.33E-196 dispersed
Cone12ag1273 Cone-Chr12:9744882 Cone3ag1247 Cone-Chr3:31282019 2.08E-243 wgd
Cone20ag0023 Cone-Chr20:143717 Cone3ag1247 Cone-Chr3:31282019 1.86E-99 wgd
Cone3ag1247 Cone-Chr3:31282019 Cone4ag2020 Cone-Chr4:14057012 6.47E-190 wgd
Cone3ag1247 Cone-Chr3:31282019 Cone8ag1327 Cone-Chr8:10741156 2.89E-268 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1273 Cone8ag1327 Cone3ag1247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45847 PF04696 Pinin_SDK_memA 4.70E-20 No_clan Cone TF