Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag1254 ATGGAGAGCGCATCGGAGTTAGTAGCATTTCCATTGCTGATTACTCCGATCGAATCCAACTACAGAGCTTGTACTATTCCTTACCGATTCCCTTCCGATCATCCTCGCAAGCCTACTCCGACCGAAATCTCCTGGATCGATCTCTTCCTGAATACCATTCCCTCCTTCAAGAAGCGGGCAGAAAGTGATCCTACTGTTACTGATGCTCCTGGTCAAGCTGAAAAGTTTGCTGAGAGGTTTACAAATATACTTGAGGACTTGAAGAAAGATCCAGAAAGCCATGGAGGCCCGCCTGATTGCATTCTCCTGTGTAGAATTCGTGAGCAAATCCTTAGAGAATTGGGATTCAAAGACATTTTCAAGAAAGTCAAGGATGATGAGAATGCGAAGGCTATAACATTATTTGCTGACGTAGTTGGTCTAAGTGATGCTGTTGAAGATGAAGGCAAGCGTTTGGATAATCTTGTTAGAGGAATATTTGCAGGGAACATCTTTGATCTTGGTTCTGCTCAGCTAGCTGAGGTGTTCTCAAAGGATGGAATGTCCTTTTTGGCTAGTATTCAAAACCTTGTCCCTCGACCTTGGGTTATTGATGATTTAGACTCCTTCAAATTAAAATGGAGCAAGAAATCTTGGAAGAAGGTTGTAATTTTTGTTGATAATTCTGGAGCAGATATAGTTTTGGGTATTTTGCCTTTTGCGAGAGAGTTACTTCGACGAGGAAGTCAGGTTGTCCTAGCAGCTAATGATTTTCCAGCAATTAATGACATAACTTACCCAGAATTGGTCAAGATTATATCGAAGTTGAAAGATGAAAATGGGACGCTTTTGGGTGTTGATGCGTCCAATCTTTTAATTGCCAATTCTGGCAATGATTTACCGGTTATTGATCTTTCACGAGTGTCACAAGAGCTTGCTTACCTGGCAAGTGATGCAGATCTAGTCATTTGTGAAGGAATGGGACGTGGAATTGAGACAAATCTTTATGCGCGGTTCAGATGCGATTCCTTGAAGATCGGCATGGTGAAACATCCAGAAGTGGCCCAGTTTCTTGGGGGCCGTCTCTATGATTGTGTCTTCAAATACAACGAAGTTTCGAGTTGA 1104 42.3 MESASELVAFPLLITPIESNYRACTIPYRFPSDHPRKPTPTEISWIDLFLNTIPSFKKRAESDPTVTDAPGQAEKFAERFTNILEDLKKDPESHGGPPDCILLCRIREQILRELGFKDIFKKVKDDENAKAITLFADVVGLSDAVEDEGKRLDNLVRGIFAGNIFDLGSAQLAEVFSKDGMSFLASIQNLVPRPWVIDDLDSFKLKWSKKSWKKVVIFVDNSGADIVLGILPFARELLRRGSQVVLAANDFPAINDITYPELVKIISKLKDENGTLLGVDASNLLIANSGNDLPVIDLSRVSQELAYLASDADLVICEGMGRGIETNLYARFRCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31377721 31381726 - Conep03aG0176100.1 Cone3ag1254 434713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag1254 367 Pfam Damage-control phosphatase ARMT1-like domain 53 359 IPR002791 -
Cone3ag1254 367 SUPERFAMILY AF1104-like 10 364 IPR036075 -
Cone3ag1254 367 PANTHER PANTOTHENATE KINASE 6 362 IPR004567 GO:0004594(InterPro)|GO:0004594(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0015937(PANTHER)|GO:0015937(InterPro)
Cone3ag1254 367 FunFam Pantothenate kinase 196 364 - -
Cone3ag1254 367 FunFam Pantothenate kinase 4 28 117 - -
Cone3ag1254 367 PIRSF UCP030210 7 367 IPR016949 -
Cone3ag1254 367 Gene3D - 28 117 IPR035073 -
Cone3ag1254 367 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 196 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag1254 K24854 - - vvi:100265775 621.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0142 Cone-Chr13:895821 Cone3ag1254 Cone-Chr3:31377721 1.01E-57 dispersed
Cone16ag0101 Cone-Chr16:576156 Cone3ag1254 Cone-Chr3:31377721 1.35E-54 dispersed
Cone10ag1207 Cone-Chr10:8954340 Cone3ag1254 Cone-Chr3:31377721 7.80E-258 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g307 . . . . . Bpe12g00157 . . Cmo19g00830 . . . . . . . Cpe15g00651 Bhi05g01551 Tan02g0548 . . Hepe02g0351 . . . . . . . . . . . Cone3ag1254 Cone10ag1207 . Csa07g00208 . . Blo04g00611 Blo13g00465 . . Bpe15g00776 . Bma03g00643 Bma08g00710 . . . . . . Car19g00627 . . . . . . . . . . . . . . . . Lsi11g01303 . Chy01g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007984 0 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36